UFO03259.5prime Sequence
1063 bp (916 high quality bases) assembled on 2009-02-03
> UFO03259.5prime
CAGTCGACATGCCGGACATCAAGATAACGCCCTTGGGCGCCGGCCAGGAT
GTGGGCCGCAGCTGTCTGCTGCTCTCGATGGGCGGGAAGAACATAATGCT
CGACTGCGGGATGCATATGGGCTACAACGACGAGCGCCGCTTCCCGGACT
TCTCCTACATAGTGCCGGAGGGTCCGATCACCAGCCACATTGACTGTGTG
ATCATCTCGCACTTCCACCTGGATCACTGCGGGGCCTTGCCCTACATGTC
AGAGATTGTGGGCTACACGGGGCCCATCTACATGACGCATCCGACCAAGG
CCATAGCACCCATCCTCCTGGAGGACATGCGGAAGGTGGCCGTAGAGCGG
AAAGGCGAGTCGAACTTCTTTACCACCCAGATGATCAAGGACTGCATGAA
GAAGGTGATTCCCGTCACACTTCACCAGAGTATGATGGTGGACACGGACC
TTGAGATCAAAGCCTACTATGCAGGCCATGTCCTGGGCGCCGCCATGTTC
TGGATCAAGGTGGGCTCCCAGAGCGTTGTCTACACGGGGGACTACAACAT
GACTCCAGACAGGCATCTGGGAGCCGCCTGGATAGACAAAGTGCCGGCCG
GACTTGCTGATCTCCGAGAGCACCTACGCCACTACCATTAGGGACTCGAA
GCGGTGTCGCGAGAGGGACTTCCTCAAGAAAGTTCACGAGTGCGTGGCTA
AGGGCGGCAAGGTTTTAATCCCTGTTTTTGCCCTGGGTCGCGCCCAGGAG
CTGTGCATCCTGCTGGAGACGTACTGGGAGCGCATGAACCTCAAGTACCC
CATATACTTTTGCTCTGGGTCTTACCGAGAAGCCAATCCCTACTACAAAA
TGTTCATCACCTGGAACGAACCAGAAGATCCGCAAGACCTTCGTTCACGC
AACATGTTCGAATTCAAGCACATCAGGCCTTTGACAAGGCCTACATCGAC
CAATCTTGCCGCGATGGTAGTGTTCGCCCACGCAAGGCATGCTGCACGCA
GGTCTTTCCCTGCAGATCTCAGAGTGGGCGCGAATTGAAACCACATGTGA
TTATGCTCGCTAC
UFO03259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 134..1184 | 9..1056 | 4805 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29745762..29746557 | 222..1019 | 3515 | 98.3 | Plus |
| 3R | 32079331 | 3R | 29745470..29745683 | 9..222 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:27 has no hits.
UFO03259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:11 Download gff for
UFO03259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 112..1147 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:18 Download gff for
UFO03259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..1164 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:11 Download gff for
UFO03259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..1164 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:11 Download gff for
UFO03259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29745465..29745683 | 1..222 | 98 | -> | Plus |
| 3R | 29745763..29746579 | 223..1038 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:18 Download gff for
UFO03259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25571187..25571405 | 1..222 | 98 | -> | Plus |
| arm_3R | 25571485..25572301 | 223..1038 | 97 | | Plus |
