UFO03261.5prime Sequence
1133 bp (1000 high quality bases) assembled on 2009-02-03
> UFO03261.5prime
CAGTCGACATGCCATACCATCGAGGCGGAGATGCCTCTTCCCAGGCCGAC
AAGCTGAGCGGCATCGTGGAGGAGAGCGATCTGTACGAAGGGTTCGCCCC
GCATGTCGAGACGTCCGAGATCAAAACCCTCGACTTCTACAATTTACCAA
AGCAAACTGGCAAGGAACCGGCACTGCGCTCCTACACGGAAATCCAGCAG
CTGCTGCAGCAGGGCAAGAAGCGCGACGTGAAGAACATACTCAGGGAGAA
CTCGTGGCCCATTAACTCCCCGATCCGAGCCCAGCTATGGCCGATGTTGT
GTGGCCAGCACCAGACCAAACAGCAAATGCTAGATGGCTTCTACTGGGAG
ATGGTTCACCAGGTCTTTGGCACCACGGAGCTGTCGGAGAAGCCGATCAT
GCTGCCCGCCTTTGTGGATGCCACCCACTGTTTGCCCTACCACTTGACCA
GCACGGGACGAGCCGTGGCCGATCGCATCGTGAATGTCCTGGGCTACGAC
TGCCCCGATATTACCTACAGTCCAGTATTGTATCCCATTACATCGATACT
TTTGCATTTCATGTCGGAGGAGGAGGCGTACATATGTCTGGCCGGTCTGG
TCGGTAGCAAGGAGAAGGTATTCATCAATCAAACCAAACTACAGCACGAA
GTCACTTGGAAGACGGTGATGCAGATAGCCAAAAAGCACACAAAAAGTGC
TACTTCGTATTTCCAACGTATTTGCCCGGGCCTGAAGCTAGAACGCATCT
TCATGGACTGGTGCTGGTGGATTCTAGCCGGTCTACCCTTCCAGCATCTG
GTGCGGATCATGGACTGCTACTTCCACGAGGGCATCAAGGTCCTGTACCG
CTTGCCCTCGTCATACTCAACCTGTTTCACAAGGAGTGCCAGTCGAACAA
CGAATGGAGTCCGACAACATAAAAACGACATTGGCAACGCTTTGATCAGT
TCTTGCAGAGATACCAGTGTCGCCGGCGAAGTTGCTCCATTCCGCGTTTA
GTATAGGGGACTGAGTACCAGTAATATTTCTAGAAAATTTATCAAGACTG
AAATGCTTACTTAAAAGCCCTTCGGGCCTCACCAACGGTTCGAGCCATAT
CAAATCCCGCTTCAGGTGATATCTGCCCATAGT
UFO03261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43739-RA | 4863 | CG43739-RA | 743..1871 | 9..1129 | 5080 | 97.5 | Plus |
| sky-RL | 4921 | CG9339-RL | 687..1815 | 9..1129 | 5080 | 97.5 | Plus |
| sky-RK | 5158 | CG9339-RK | 951..2079 | 9..1129 | 5080 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20877149..20877477 | 1015..693 | 1275 | 96 | Minus |
| 2L | 23513712 | 2L | 20881987..20882194 | 567..360 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882465 | 364..159 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 20903015..20903166 | 160..9 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 692..567 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:49 has no hits.
UFO03261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:43 Download gff for
UFO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-RD | 895..1974 | 2..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:50 Download gff for
UFO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RJ | 760..1839 | 2..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:36 Download gff for
UFO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RK | 946..2025 | 2..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:36 Download gff for
UFO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20877553..20877677 | 568..692 | 100 | <- | Minus |
| 2L | 20881987..20882191 | 363..567 | 100 | <- | Minus |
| 2L | 20882262..20882464 | 160..362 | 100 | <- | Minus |
| 2L | 20903016..20903171 | 2..159 | 97 | | Minus |
| 2L | 20877149..20877477 | 693..1015 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:50 Download gff for
UFO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20881987..20882191 | 363..567 | 100 | <- | Minus |
| arm_2L | 20877553..20877677 | 568..692 | 100 | <- | Minus |
| arm_2L | 20877149..20877477 | 693..1015 | 96 | <- | Minus |
| arm_2L | 20882262..20882464 | 160..362 | 100 | <- | Minus |
| arm_2L | 20903016..20903171 | 2..159 | 97 | | Minus |
