UFO03263.5prime Sequence
1145 bp (1063 high quality bases) assembled on 2009-02-03
> UFO03263.5prime
CAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCGGCAAGAAG
AAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCCCCAAAGTA
TCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCCGGAAACGA
CCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACCGAAACAAG
AACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAAAAGGAACT
GGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACTCAGTCCCG
CTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACTTCCCAGTT
CGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGATCGCACCGA
GAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAAGCAGCGTG
CTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGGAAACCTGG
CGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTGATCATTGT
GGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTACGACTATA
TTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACAAGGTGGAT
CTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTCCGCGACCG
TTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCCCCGATCCC
GCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTATGGAAGGA
GTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGAGAGGTGGA
TCTAACAACCTGGGAGCAGAAGATACGAGAGGACATGCGTAGTGATCAGC
TTGACATCCTGATGAAATATCAACGGCCGTGGAGGTGAACTCAAGATCAG
CAGCAGCATCGACACCACGCCCCACGAGCACGTTAATATCACAGTGGGGT
CTGACATTGGCTGCATTGGATTCCCAATGTTCGGAAAGTCGTCGCTGATC
ATGCCTTAAAGGGACGCAGGTGGTCAGCGTAGTCGCACGCCGACTACAAG
CACTTCGACTTTCCTCACCCACTGTTCGCCTGTGAATGTCGGCTA
UFO03263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns4-RA | 1961 | CG9320-RA | 137..1278 | 9..1131 | 5220 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20753172..20753856 | 415..1091 | 2950 | 98.1 | Plus |
| 2L | 23513712 | 2L | 20752779..20753110 | 86..417 | 1660 | 100 | Plus |
| 2L | 23513712 | 2L | 20752612..20752692 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:46 has no hits.
UFO03263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:39 Download gff for
UFO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9320-RA | 213..1321 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:48 Download gff for
UFO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns4-RA | 137..1245 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:35 Download gff for
UFO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns4-RA | 137..1245 | 9..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:35 Download gff for
UFO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20752612..20752690 | 9..87 | 100 | -> | Plus |
| 2L | 20752781..20753109 | 88..416 | 100 | -> | Plus |
| 2L | 20753174..20753874 | 417..1105 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:48 Download gff for
UFO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20752612..20752690 | 9..87 | 100 | -> | Plus |
| arm_2L | 20752781..20753109 | 88..416 | 100 | -> | Plus |
| arm_2L | 20753174..20753874 | 417..1105 | 98 | | Plus |
