UFO03264.5prime Sequence
1133 bp (1017 high quality bases) assembled on 2009-02-03
> UFO03264.5prime
CAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACGTGACTCGC
ATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGACTGGACGA
TGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCAGAAGGACG
CGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGGGCAAGATC
GCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGCAAAACGGC
CATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCCATTCACTA
GCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGACCGAGGCT
CTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAGGAGGAAAC
CGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACGCCCCGCCT
CGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCACCGAGATG
GAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTCATGAAAGA
GAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTCCGGAAAGG
TCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACGACGCCACT
GGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTTCAAAAACG
CAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGTTATCAATA
GTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTGGAGAGATC
AAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAGTGGCGCGA
GGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGACGAGGGCA
CATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCTGAGTCGACA
TGGCTCCGGTGGTGTGATGGCAACACCGCGGCATCACTCGTATTAGGGGC
ACTAACTATCCGCAGTCCGACGCATACCATTGATCTACTCGATCGCATGA
TCATCATACGCACTGTACGTATTCCGAAAGGAGTTAAGGAAATCCCTAAG
AATTCCCTGCGGGGAGAAGACGCATCATGACCC
UFO03264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rept-RB | 1707 | CG9750-RB | 176..1309 | 9..1129 | 5160 | 97.9 | Plus |
| rept-RC | 1714 | CG9750-RC | 118..1251 | 9..1129 | 5160 | 97.9 | Plus |
| rept-RA | 1772 | CG9750-RA | 176..1309 | 9..1129 | 5160 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19255515..19256583 | 9..1068 | 4845 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:03 has no hits.
UFO03264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:37 Download gff for
UFO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rept-RA | 162..1275 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:18 Download gff for
UFO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rept-RA | 170..1283 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:03 Download gff for
UFO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rept-RA | 170..1283 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:03 Download gff for
UFO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19255509..19256622 | 1..1105 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:18 Download gff for
UFO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19248609..19249722 | 1..1105 | 97 | | Plus |
