UFO03266.5prime Sequence
1146 bp (1032 high quality bases) assembled on 2009-02-03
> UFO03266.5prime
CAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATATCGAGCAT
GTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTCGGTTCGGG
CAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCATCTGCCACT
GCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATTGCTCCGGC
AGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTCACCGCCTC
CGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCATGCACACCA
AGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCGGCATTGAA
AGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCAGCCCTGTG
CGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGACGATGTCC
AGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCGTTGTCACC
GTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGCAAGGCATA
TCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCTACTGATTC
AGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCCCAGTGGCC
GCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGATCGACGAG
CGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATACTGTGCCC
ACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTGCCGAAATG
GGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCACATCATAT
GCTTCAAATGGCCGCTGAACTAGAGGTGCCGCACAGCAGCAGCAGTGCCT
GCACGCAGACGGAGACGGACATGGCCACCAGCGGCACCAGCAGATGCAGC
AGAGCGGCCAGCAATTGGGCCAGTGGCGGTGGCCGCCAATATCGAGTGCT
CGCAGTCACAGCACATTACGATCGCGGACTGGGCCCTCGATGATGTGGTC
TTCGCGATTCTCATCATCGACCTGGTCCTCAGATCGGGCAGCATGACGCC
CTTCCACGAACTCTACCACTGGCGTGAGCATCCGGAAGTTTTAGTT
UFO03266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4080-RB | 3453 | CG4080-RB | 642..1747 | 9..1109 | 5260 | 98.8 | Plus |
| CG4080-RA | 2771 | CG4080-RA | 642..1747 | 9..1109 | 5260 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9388591..9389122 | 1109..583 | 2215 | 97.4 | Minus |
| 3L | 28110227 | 3L | 9390567..9390801 | 320..86 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 9390281..9390427 | 465..319 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 9390002..9390124 | 586..464 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 9398507..9398586 | 88..9 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..752 | 984..859 | 151 | 62.7 | Minus |
UFO03266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:34 Download gff for
UFO03266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 665..1778 | 9..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:34 Download gff for
UFO03266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 642..1755 | 9..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:36 Download gff for
UFO03266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 642..1755 | 9..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:36 Download gff for
UFO03266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9398507..9398586 | 9..88 | 100 | | Minus |
| 3L | 9388581..9389118 | 587..1119 | 96 | <- | Minus |
| 3L | 9390002..9390122 | 466..586 | 100 | <- | Minus |
| 3L | 9390281..9390425 | 321..465 | 100 | <- | Minus |
| 3L | 9390567..9390798 | 89..320 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:34 Download gff for
UFO03266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9381681..9382218 | 587..1119 | 96 | <- | Minus |
| arm_3L | 9383102..9383222 | 466..586 | 100 | <- | Minus |
| arm_3L | 9383381..9383525 | 321..465 | 100 | <- | Minus |
| arm_3L | 9383667..9383898 | 89..320 | 100 | <- | Minus |
| arm_3L | 9391607..9391686 | 9..88 | 100 | | Minus |
