Clone UFO03267 Report

Search the DGRC for UFO03267

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:32
Well:67
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptl(2)k01209-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03267.5prime Sequence

1148 bp (1023 high quality bases) assembled on 2009-02-03

> UFO03267.5prime
CAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGGGCCACAAC
ACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCAAAAGGGGC
AAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACTAACCATCG
CAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAACAGCAGCAG
CAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCTATAGCAGC
CAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGTCACAGAGC
AACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGCCCGGGGAT
CTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAAGCATCGTT
GGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCACATCCATTG
GCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATACGCGCAAAT
AACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAATTGTGCTGG
GCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAGTGCCTCTG
GCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACGTTCCATGG
GTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAATGAGAAACA
GCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCCGGATGCCT
TCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGGAGGGCCGA
AAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGTGAGAGCCA
AACGAAAACCATGTACGGGCCAATGTGATCATCTTCGAGGGTATTCTTAC
CTTTCATAGTCCTGAAGTACTTAAATTGCTAGACATGAAGATATTTGTGG
ACACAGATCCCGATATTCGTCTGGCCAGGCGGTTAAGAAGGACATCTCTC
AGCGCGGACGAGACCTCAAGGGCGTGCTGAGCAATACCTTATATGTTTAG
GCCCTCCTTATTGCAATTACATAGCTCCAACATGGCCATGCAGAATAATC
ATTGCTCCTCGTGGAGGCGACAAACAAGGTGCCATCCCATTCTCAATG

UFO03267.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 311..1442 9..1137 5360 98.8 Plus
l(2)k01209-RC 2380 CG4798-RC 407..1538 9..1137 5360 98.8 Plus
l(2)k01209-RB 3254 CG4798-RB 1281..2412 9..1137 5360 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17423656..17423964 269..577 1545 100 Plus
2R 25286936 2R 17424196..17424506 682..991 1505 99.7 Plus
2R 25286936 2R 17421687..17421946 9..268 1300 100 Plus
2R 25286936 2R 17424026..17424134 575..683 545 100 Plus
2R 25286936 2R 17424573..17424707 990..1123 320 90.6 Plus
Blast to na_te.dros performed 2014-11-28 20:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2491 12..226 337 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6948 31..232 279 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2583 5..243 244 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..7055 5..219 162 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1588 50..125 124 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1096..1150 31..85 122 69.1 Plus
BS 5142 BS BS 5142bp 1977..2071 12..108 120 59.8 Plus

UFO03267.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:31 Download gff for UFO03267.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 652..1792 9..1148 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:40 Download gff for UFO03267.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..2421 9..1148 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:58 Download gff for UFO03267.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..2421 9..1148 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:58 Download gff for UFO03267.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17421687..17421946 9..268 100 -> Plus
2R 17423656..17423963 269..576 100 -> Plus
2R 17424028..17424134 577..683 100 -> Plus
2R 17424198..17424505 684..989 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:40 Download gff for UFO03267.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13309192..13309451 9..268 100 -> Plus
arm_2R 13311161..13311468 269..576 100 -> Plus
arm_2R 13311533..13311639 577..683 100 -> Plus
arm_2R 13311703..13312010 684..989 99 -> Plus