UFO03267.5prime Sequence
1148 bp (1023 high quality bases) assembled on 2009-02-03
> UFO03267.5prime
CAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGGGCCACAAC
ACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCAAAAGGGGC
AAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACTAACCATCG
CAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAACAGCAGCAG
CAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCTATAGCAGC
CAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGTCACAGAGC
AACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGCCCGGGGAT
CTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAAGCATCGTT
GGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCACATCCATTG
GCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATACGCGCAAAT
AACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAATTGTGCTGG
GCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAGTGCCTCTG
GCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACGTTCCATGG
GTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAATGAGAAACA
GCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCCGGATGCCT
TCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGGAGGGCCGA
AAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGTGAGAGCCA
AACGAAAACCATGTACGGGCCAATGTGATCATCTTCGAGGGTATTCTTAC
CTTTCATAGTCCTGAAGTACTTAAATTGCTAGACATGAAGATATTTGTGG
ACACAGATCCCGATATTCGTCTGGCCAGGCGGTTAAGAAGGACATCTCTC
AGCGCGGACGAGACCTCAAGGGCGTGCTGAGCAATACCTTATATGTTTAG
GCCCTCCTTATTGCAATTACATAGCTCCAACATGGCCATGCAGAATAATC
ATTGCTCCTCGTGGAGGCGACAAACAAGGTGCCATCCCATTCTCAATG
UFO03267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k01209-RD | 2284 | CG4798-RD | 311..1442 | 9..1137 | 5360 | 98.8 | Plus |
l(2)k01209-RC | 2380 | CG4798-RC | 407..1538 | 9..1137 | 5360 | 98.8 | Plus |
l(2)k01209-RB | 3254 | CG4798-RB | 1281..2412 | 9..1137 | 5360 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17423656..17423964 | 269..577 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 17424196..17424506 | 682..991 | 1505 | 99.7 | Plus |
2R | 25286936 | 2R | 17421687..17421946 | 9..268 | 1300 | 100 | Plus |
2R | 25286936 | 2R | 17424026..17424134 | 575..683 | 545 | 100 | Plus |
2R | 25286936 | 2R | 17424573..17424707 | 990..1123 | 320 | 90.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2491 | 12..226 | 337 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6948 | 31..232 | 279 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2583 | 5..243 | 244 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..7055 | 5..219 | 162 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1588 | 50..125 | 124 | 68.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1096..1150 | 31..85 | 122 | 69.1 | Plus |
BS | 5142 | BS BS 5142bp | 1977..2071 | 12..108 | 120 | 59.8 | Plus |
UFO03267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:31 Download gff for
UFO03267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k01209-RD | 652..1792 | 9..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:40 Download gff for
UFO03267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k01209-RB | 1281..2421 | 9..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:58 Download gff for
UFO03267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k01209-RB | 1281..2421 | 9..1148 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:58 Download gff for
UFO03267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17421687..17421946 | 9..268 | 100 | -> | Plus |
2R | 17423656..17423963 | 269..576 | 100 | -> | Plus |
2R | 17424028..17424134 | 577..683 | 100 | -> | Plus |
2R | 17424198..17424505 | 684..989 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:40 Download gff for
UFO03267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13309192..13309451 | 9..268 | 100 | -> | Plus |
arm_2R | 13311161..13311468 | 269..576 | 100 | -> | Plus |
arm_2R | 13311533..13311639 | 577..683 | 100 | -> | Plus |
arm_2R | 13311703..13312010 | 684..989 | 99 | -> | Plus |