UFO03269.5prime Sequence
1110 bp (988 high quality bases) assembled on 2009-02-03
> UFO03269.5prime
CAGTCGACATGACCACAACGAACTCAAGCAATTCCAGCACCACCTCGGTG
ACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCCACCACATC
GAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCACTACCAGCA
GCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCTTTGGTTCC
CGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCCACCGGCAA
TGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGACCTGACTA
AGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGCGGAGCAGC
ACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACTGGACTAAC
CTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGAGAAGGTCA
AGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGCCGCTCAAG
AAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTGGGCGGCAA
GAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCATGATTTGG
CGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATCAACTACCT
GAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCCACGATTGC
AGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCATACTCACGG
ATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCACCATCGGCG
GCTATCAATGTGCTGGGCGAAAGTAATAACAATTCCGTATATGTAAATGG
CAGTGGAATGTCCGGATCTGGTGGAGCAGAAGTGCCAGTGAGTTGAGTGA
AGATGGCGTGCTGGAGGAAGACTTCTGATGACATTCCACCGGCGAGGACC
ACAGTTGGCCAAACCCAAGCCACGTGAGTGGGAGAAGAAGAGCGCCTTGA
TGGAGGAGCTGAAGGCCTCGCAGTCACCAGAAAAGACCTCACCAGTGGTG
GAGCCGAGGAGCTCGGTGGCGAAGAATCAACCTTGCGGCCGACAGCTGTC
AGCGCATAGC
UFO03269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..2942 | 7..1070 | 5025 | 98.5 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..1182 | 7..1070 | 5025 | 98.5 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..1238 | 7..1070 | 5025 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824362..30824888 | 7..533 | 2635 | 100 | Plus |
| 3R | 32079331 | 3R | 30824954..30825454 | 531..1023 | 2140 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-28 20:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 115..163 | 114 | 74.5 | Plus |
UFO03269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:04 Download gff for
UFO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RB | 182..1268 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:07 Download gff for
UFO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1242 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:02 Download gff for
UFO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1242 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:02 Download gff for
UFO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824357..30824886 | 1..531 | 99 | -> | Plus |
| 3R | 30824955..30825511 | 532..1073 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:07 Download gff for
UFO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650079..26650608 | 1..531 | 99 | -> | Plus |
| arm_3R | 26650677..26651233 | 532..1073 | 96 | | Plus |
