UFO03274.5prime Sequence
1117 bp (992 high quality bases) assembled on 2009-02-03
> UFO03274.5prime
CAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGGGCGCCGGC
TTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTCGGCATCAA
CGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCATTATGAATG
TCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCCGCGAGGCC
ATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGATCGCTGCTC
CTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCATTTGCGCTG
TTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGTCGGCGGTG
GACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCCGTGGCCTT
TTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGTCGCCCAGG
TCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGCACATCCTG
GTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGCAGTGCGGC
AATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGACCATTGTCC
TGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCAAGGATTTC
GTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCCTGGCAGGT
CTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCTGAGCGACT
TCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCAACCGGGAA
CTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGCGTGCTGAAGCAAATC
CTCACCGAGGGCGAGAAGTACGTGATGTCCGTGTCGCCGGTGCTGAGCTT
CGGGAGCAGCCACCTACGATGTGTCAACATTTGGGCAGCATGGCGGCCGC
TTCATCTTCCGACCATCGAGGACAGTTCGTACTTTACTTCACGCAGATGC
TATCCCGGGAATTCAGCTGGCCAAGCAGCGCCAGGAGCGCGTCGTCAAGC
GAGATGTCTGAATAACTGCTCTGGGGGTGACTCATGGGCTGATCCCTCAC
TTGGACAAGACTACTCG
UFO03274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 2020 | CG3149-RA | 141..1222 | 9..1076 | 4955 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5693850..5694622 | 1043..280 | 3325 | 98.1 | Minus |
| X | 23542271 | X | 5694691..5694908 | 284..67 | 1090 | 100 | Minus |
| X | 23542271 | X | 5695006..5695065 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:21 has no hits.
UFO03274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:01 Download gff for
UFO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 135..1211 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:50 Download gff for
UFO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 134..1210 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:44 Download gff for
UFO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 134..1210 | 1..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:44 Download gff for
UFO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5693824..5694618 | 284..1065 | 97 | <- | Minus |
| X | 5694692..5694906 | 69..283 | 100 | <- | Minus |
| X | 5695006..5695070 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:50 Download gff for
UFO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5587857..5588651 | 284..1065 | 97 | <- | Minus |
| arm_X | 5588725..5588939 | 69..283 | 100 | <- | Minus |
| arm_X | 5589039..5589103 | 1..68 | 94 | | Minus |
