UFO03276.5prime Sequence
1148 bp (1049 high quality bases) assembled on 2009-02-03
> UFO03276.5prime
CAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAACGACGTAC
AAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGTACGGACGC
AGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGCGCGCAAGC
AGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGCCGACGGTG
GAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGCTTCAAGGT
GGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCCGCTCACGC
AACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAACGGATAAG
AAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCGAGCGTGGA
TGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCTCGAGTTTG
CCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTGCCGAATCG
AACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTAGAACAGCT
GAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCACCTGGATG
AGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGGCCGTTGGC
GGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGCCGGGAATG
GCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCAGTATACGG
GAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGCCGTGGAAA
ACGGAAGCGGAAAGCGAAAACCTCGAGCTGAGCAACAGCTGCCCCGTTTC
AAGCACGACCCGCGAACCCTCGGCTACAGCACCAAGCATCAGCACGCCAC
CATGTGCAGGCTATTGGCCCAAAGGAAATGAGATACTTCGGCCTGCTCTC
ATTTCATCGCGTGCACACCTGCAGATCCGTCCGAAATCGTCGGCGAGCAG
ATCAGCTGGAGGCATTGCATTCGCTGCGATAATCGTCATACGCCTGCTTT
TGCCCAGGCGAACTACAATGCTCACACCCTACACGACTGAACTATCATGA
ACCTCACTTGATCCGAACCGCAAGCATGGACTTAGAATACGCTAATAC
UFO03276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 2078 | CG8470-RB | 125..1200 | 8..1070 | 5065 | 98.8 | Plus |
| mRpS30-RA | 1829 | CG8470-RA | 125..1200 | 8..1070 | 5065 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15786794..15787410 | 467..1070 | 2495 | 97.4 | Plus |
| X | 23542271 | X | 15786171..15786630 | 8..467 | 2300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:34 has no hits.
UFO03276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:59 Download gff for
UFO03276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 95..1195 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:29 Download gff for
UFO03276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 119..1219 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:53 Download gff for
UFO03276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 119..1219 | 1..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:53 Download gff for
UFO03276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15786165..15786629 | 1..466 | 99 | -> | Plus |
| X | 15786794..15787420 | 467..1077 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:29 Download gff for
UFO03276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15680198..15680662 | 1..466 | 99 | -> | Plus |
| arm_X | 15680827..15681453 | 467..1077 | 97 | <- | Plus |
