UFO03280.5prime Sequence
1104 bp (997 high quality bases) assembled on 2009-02-03
> UFO03280.5prime
CAGTCGACATGAGCATTAACTGGATAAAGATCACGGAAAGAGCCCGTGAG
GGCATCAAAATCATCAATGCCTTGCCCTACGAGACCTTTACGACGGTTCT
GTTCTACACCCACCGGCAGATGAGTCCCAGCGTAGCATCGGCGAGTGCCA
CCAGTAGTACAGTGGGCACCAGTGTGACGACCACCGGCCGGGTGGACAGC
AGCACCGAGGAGAACCCCACAAGTAACACCGAACCGGAGTACACACTCGA
GGAACTGGAGCGATTGGTGGGCGTACCGCGTCAGGACTTCCTGCTGCTGA
TCAAGACCTTCTCCTACATCCTGCGTCGCATCTCCACGTTTATCATCAAG
CCAAGTTTGCTGCAGCGTGAGCTGCGCGAGAAACTCCAGCTGGAGGATGA
GGCCAAGATCGATGCCATATTGCGTTTGTGGGTGCGCGAAACGACGCCCA
TTATGAACAATTTGGCCAGCAAGCGGTACGAATCAAATGTCATCGAAGAT
GTGGCCTGGAAGCTCAACATGGAGATCTCCTCGCATTGCCAGCAGCGGGA
GAAGACCCCGCTGGCCGTGCTCCAAATGAAAACGGCCGTCGGCGAGGATA
TCAACATCGAAATGACACAACCGGAACTAATGGAACTGTACAATCAGTTC
GAGAGCATCCAGGGCGAACTGGACGCCATGCTGGCCATGAAGACTACAGG
AGCAACGGCGCCTGTCAATCACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAACGCCCGGCGGCAACCGAGCGTTCTGACAATCCAGATGGAGTT
CTGAGTCATTACTGATCTATCACAGGAGTCCAGCGAGCTCGATATTCAAT
TACGCCCCGCCTGCCACTCATCGCAGTACTGTTGTATTCATTAGCATTCT
GCGACATGCAGCATCACAACGCATGATGACTGATCGCCAGCGGCATCAGC
CTTGTTCGCTTGCTATATATTGCCATTGTGAAACGGGCGAAGATTGTTCT
ATAT
UFO03280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2371-RB | 1155 | CG2371-RB | 118..830 | 9..721 | 3550 | 99.9 | Plus |
| CG2371-RC | 1246 | CG2371-RC | 239..921 | 39..721 | 3400 | 99.9 | Plus |
| CG2371-RA | 1076 | CG2371-RA | 148..751 | 118..721 | 3005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11677669..11678351 | 721..39 | 3400 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:31 has no hits.
UFO03280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:57 Download gff for
UFO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2371-RB | 112..830 | 1..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:26 Download gff for
UFO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2371-RB | 112..830 | 1..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:50 Download gff for
UFO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2371-RB | 112..830 | 1..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:50 Download gff for
UFO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11677669..11678349 | 41..721 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:26 Download gff for
UFO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11571702..11572382 | 41..721 | 99 | <- | Minus |
