UFO03286.5prime Sequence
1124 bp (1013 high quality bases) assembled on 2009-02-03
> UFO03286.5prime
CAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGGACATCAAT
CGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAACCCGTGGG
TCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGGAACCAGCA
CGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGGCGGTCCAT
GCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATGGATCACGA
GAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCCCGCCGATT
CGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGATGGACGCC
GATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGATCATGTCCA
GTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCACAGCGCTG
GGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAAACGAGGAC
TGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCAGAAAGCGA
GATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGAGATCATGC
TCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGGTGGGCTGC
ATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGAACCGATCA
CATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCCAGCTGATG
AGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATATTCGTTCA
CTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGCGGTGCCAA
TCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGGAACTTGACGCCGACA
GCGCATAACCGCCGAGCAGCGCTGGCTCATCCGTACATGGAGAAGTACCA
CGATCAACCGATGAGCAGACCGCCGCGCTCTACGACCAGAGCTTCGAGAG
ACGAGCTGCCGTGAGAATTGCGGAGAATGTCTTCAGCGAGGTGACGCTTC
AGCCACAGCCGCCTCGCTGAGCTCCTGCCCAAGAGACAGCAGCTTTCTAA
CAATTCGTTGGGCCGCGGCAGGTA
UFO03286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p38b-RA | 1821 | CG7393-RA | 206..1297 | 5..1082 | 5045 | 98.3 | Plus |
| p38a-RC | 1474 | CG5475-RC | 215..925 | 33..743 | 1255 | 78.7 | Plus |
| p38a-RB | 1634 | CG5475-RB | 375..1085 | 33..743 | 1255 | 78.7 | Plus |
| p38a-RC | 1474 | CG5475-RC | 1028..1131 | 846..947 | 200 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13780996..13781992 | 5..998 | 4805 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24150965..24151675 | 743..33 | 1215 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:34 has no hits.
UFO03286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:17 Download gff for
UFO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 196..1297 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:10 Download gff for
UFO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 203..1304 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:26 Download gff for
UFO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 203..1304 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:26 Download gff for
UFO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13780993..13782093 | 1..1091 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:10 Download gff for
UFO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13780993..13782093 | 1..1091 | 97 | -> | Plus |
