UFO03287.5prime Sequence
1078 bp (968 high quality bases) assembled on 2009-02-03
> UFO03287.5prime
CAGTCGACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAGCAACAAGC
ACGCCGGCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTTGGAGGCAC
AGCTGCAACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGCCACATCGA
CTCCGGCTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAGCAGGTTCC
GCCTTTGGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCCACAGGAAC
TTCTGCCTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATTTGGTGCGG
CGACAACCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTTTCGGCGGA
TTTGGAGCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGCGCTCCAGC
GACTAGTGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACAGGCAGCTG
CGAGTACAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAACCACAACG
TCGGCACCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACTGGCTTTGG
GGGCGGAGCCTTCGGATCCACGTTCGGAAAACCAGCGAATACAACAGTTA
CGCCGGGATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTGGACAGCCG
CAACAGCAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCCCAATCCAT
TCTGAATGTATCCATTTTCGGGGATGAACGGGACAAAATAGTGGCCAAAT
GGAACTACTTGCAGCTACGTGGGGCACTGGGAAAATGTTTTACTCCCAGA
GTGCGGCACCGGTAGACATTACGCCGGAGACGTGATGTGCCGGTTCAAGC
CATAGCTACAGTTCGTATGCCGGGCAAGATACAGTTGGGACTGGTGCTCT
ACTTCTGCAGAGACTCTCAGCTGTCAGCCACACAGCACAGTGATCAACGC
TCACAGTTTATCGCAGCAAGCCACATGCTGGTCACATAGATCATCAGGAT
TGAGAACAACTGCTATGGTTATTTATGTCAGGAACTCACATGCTCCAACG
AGCAGCGTTACTGCACGAACTTCACTAC
UFO03287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 163..1168 | 8..991 | 4440 | 97.5 | Plus |
| CG43204-RA | 641 | CG43204-RA | 227..282 | 63..8 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12429954..12430460 | 570..64 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 12429584..12429894 | 878..571 | 1310 | 98.4 | Minus |
| 2R | 25286936 | 2R | 12430882..12430937 | 63..8 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:53 has no hits.
UFO03287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:17 Download gff for
UFO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-RA | 153..1113 | 1..947 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:31 Download gff for
UFO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 157..1117 | 1..947 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:19 Download gff for
UFO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 157..1117 | 1..947 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:19 Download gff for
UFO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12430882..12430940 | 1..63 | 93 | | Minus |
| 2R | 12429529..12429894 | 571..926 | 96 | <- | Minus |
| 2R | 12429954..12430460 | 64..570 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:31 Download gff for
UFO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8317034..8317399 | 571..926 | 96 | <- | Minus |
| arm_2R | 8317459..8317965 | 64..570 | 100 | <- | Minus |
| arm_2R | 8318387..8318445 | 1..63 | 93 | | Minus |
