UFO03288.5prime Sequence
1133 bp (1032 high quality bases) assembled on 2009-02-03
> UFO03288.5prime
CAGTCGACATGTCGGGCACCATACTGGAGAACCTGAGTGGCCGCAAGCTG
TCCATATTGGTGGCCACTTTGCTGCTCTGCCAGGTGTTGTGCTTCCTGCT
GGGCGGTCTGTATGCCCCCCTGCCCGCCGGCCATGTCACCGTGCTGGGAT
CGCTGTGCCGCGAGGATCACGCCCGCCAGAATGACACCAGTTTCCTGCTG
TACTCACGCGGTGCAGGAGCCTGCATCCCAGTGACGCGAGAGGAGGTGGA
GCAGGATTCAACAAAGATGGCCAATGAGTTGGTGCACGTTTTCCAGATGC
CGCTGCCTCGTGACCTGCGCGACCTGGACTACTCCCGTTGGCAGCAGAAT
CTGATCGGTGTGCTACAGGTGGAGTTCGGCTATGATTCCTCGTCGGAGCT
AAGGGAACCGCCCAGGGAACTTCAGTTGACAATCGACATGCGTCTGGCGT
ACCGAAATAAGGGGGATCCGGACAACGGCTGGAAGTTGTACGCCCACGGC
GTCGAGCATCGCTACCTGGATTGTGTCACTTCTCATGTGGGTCCCACAGA
AACGCTGTACTCATGCGACATGATACCGCTTTTCGAATTGGGCGCATTGC
ACCACAGCTTCTATCTGCTGAACTTGCGTTTCCCGCTGGACACACCGAGC
CAAATGAACCTGCAGTTCGGCCATATGCACGATCTCACGCTGACAGCTAT
TCATCAGAACGGAGGATTCACACAGATTTGGCTGTTGCTTAAGACAATGC
TGTTTCCATTCGTAGTGGGCATCATGATATGGTTCTGGAGGCGAGTGCAT
CTGCTGCAACGATCCCCCGCCCTGCTGGAGTATATGCTTATCTATTTGGG
AGCCGCTCTGACCTTCCTCAATCTACCGCTGGAGTACTTGTCGCTGGTCT
ACGAGATGCCGTACATGCTGCTGCTAAGTGATATTCGCCAGGCATCTTTT
ATGCCATGCTGCTCACTTTCTGGCTGGTCTTCGCCGGTGACACATGCTCA
TTCAGATGCCTCGGACAAGTCGACCATTCGCTCGCGTACTGAACATTCTC
TCGCGGTCGGTCGGGGGCTGCATCTTCGCTGTTTCGTCTTTCGAACTCCT
GCAAGGGCGTGCACCTACGCATCCATTCTCTAA
UFO03288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RB | 2478 | CG6210-RB | 181..1306 | 9..1129 | 5135 | 97.8 | Plus |
| wls-RA | 2574 | CG6210-RA | 181..1306 | 9..1129 | 5135 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168414..11169445 | 1037..9 | 4965 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:50 has no hits.
UFO03288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:16 Download gff for
UFO03288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RB | 189..1246 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:28 Download gff for
UFO03288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 173..1230 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:18 Download gff for
UFO03288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 173..1230 | 1..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:18 Download gff for
UFO03288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11168396..11169453 | 1..1053 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:28 Download gff for
UFO03288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11161496..11162553 | 1..1053 | 98 | | Minus |
