UFO03290.5prime Sequence
1133 bp (1037 high quality bases) assembled on 2009-02-03
> UFO03290.5prime
CAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCATCCCGGAG
CTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATACCCAAGGA
ACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTACGGAGTCA
ACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGACGACCATG
GAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGATGGGAGTA
CAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGATCTAGTGT
GCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTAATACTGGC
GGTCCAGTGGGAGTCTATCTTTTCGGATTACTCAATGATCGTGGTGGACG
AAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGGCAGCCTAA
TGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTCGAGTCATC
GTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATAATATCTCT
GGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGATGACGTGCA
CCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTTATCTGGAG
CGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTTTACGCCTA
TTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCTTTTGATGC
GCGGTCGCCTGGAGGAGGCTCTCAAGATTCTGGAGCGCATGGCAAAGGTC
AATGGCAGAGAGTTTCCCGAGGCTGTGCATCTCAAGCTGGAGGCTCAGAT
ACGACGGGATAAGCTCAAGAAGCAAAAGAAAAGATGGCCAATGTGGGGGC
TAGCAGATCTCTGTCGCACCCCCATATGCGCTTAAAGACCATCCTAATCA
CGCTGAGTTGGTTTGCCAATGAGACGGTTTTTCTGGGACTCAGTTATTAC
GGACAGCGCTGGGCACCAATCAGTATGTCAGCTTCTTTCTGTCGCTGTTG
GGGGCTGCGAGCTATTTGTGGCCTCCTGTCTTCATGGATTCTTGGGGCGA
GAGTGCAATTGAACCTATCATGAAATGGGTGGC
UFO03290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..1386 | 9..1133 | 5155 | 97.7 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..1386 | 9..1133 | 5155 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728521..20729020 | 1044..547 | 2290 | 99 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 546..288 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 287..104 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:11 has no hits.
UFO03290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:14 Download gff for
UFO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 214..1308 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:52 Download gff for
UFO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1338 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:19 Download gff for
UFO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1338 | 1..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:19 Download gff for
UFO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20729483..20729665 | 105..287 | 100 | <- | Minus |
| 2L | 20729877..20729981 | 1..104 | 96 | | Minus |
| 2L | 20728466..20729020 | 547..1096 | 97 | <- | Minus |
| 2L | 20729076..20729334 | 288..546 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:52 Download gff for
UFO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20729076..20729334 | 288..546 | 100 | <- | Minus |
| arm_2L | 20728466..20729020 | 547..1096 | 97 | <- | Minus |
| arm_2L | 20729483..20729665 | 105..287 | 100 | <- | Minus |
| arm_2L | 20729877..20729981 | 1..104 | 96 | | Minus |
