UFO03291.5prime Sequence
1105 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03291.5prime
CAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGGCTCTGAAA
AGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAGGATCTGAC
CGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGGCTTCGCCC
TGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACTTGCTCTCC
GCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGGCAGCTGGA
GTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCACAACGTAA
TGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGAAAGCTCTA
CCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAGCACACCAC
CTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCACATTTTCC
AGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGGCCGGTGAC
TTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGACCCCCGCAA
CCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAACGTATCCGC
TGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTTACTTTCCA
ATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACCCGTGATGA
ATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGAATTCGCTG
AGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGTTGCTGGTT
GCCAAACTGGACTCCATAGAACTGCTGCACCAAGCTGCCGTGAAGTTCCC
GCCTTCCGTTCTGGAGCCGCACTTCGATCAGATATGGCAGGCTCTGAAAA
CAGAGACTTTTCCAGGAAATGACATGAGGAGATACTGAAAGCTTCCCTTA
AGCGTGTCTGCGCTCCTGAGAGAGCTGCTCACATACCGAAATAGCCACAG
CTACCAAAGCTCTATTCTGGGCGTAATCTACGCATCTCAGCGATGTCAAT
CAGCGGCTCTTCATCTGCACGGATCGCCCTTAGTTTGGTATCGGGAAGTG
CCCTA
UFO03291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mms19-RB | 3233 | CG12005-RB | 100..1200 | 9..1096 | 5115 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5232790..5233174 | 93..477 | 1925 | 100 | Plus |
| 3R | 32079331 | 3R | 5233384..5233734 | 477..827 | 1755 | 100 | Plus |
| 3R | 32079331 | 3R | 5233792..5234035 | 827..1062 | 800 | 94.3 | Plus |
| 3R | 32079331 | 3R | 5232642..5232726 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:02 has no hits.
UFO03291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:14 Download gff for
UFO03291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 92..1179 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:46 Download gff for
UFO03291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 95..1182 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:12 Download gff for
UFO03291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 95..1182 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:12 Download gff for
UFO03291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5232637..5232726 | 1..93 | 95 | -> | Plus |
| 3R | 5232791..5233174 | 94..477 | 100 | -> | Plus |
| 3R | 5233385..5233734 | 478..827 | 100 | -> | Plus |
| 3R | 5233793..5234056 | 828..1078 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:46 Download gff for
UFO03291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1058359..1058448 | 1..93 | 95 | -> | Plus |
| arm_3R | 1058513..1058896 | 94..477 | 100 | -> | Plus |
| arm_3R | 1059107..1059456 | 478..827 | 100 | -> | Plus |
| arm_3R | 1059515..1059778 | 828..1078 | 94 | | Plus |
