UFO03293.5prime Sequence
1142 bp (1038 high quality bases) assembled on 2009-02-03
> UFO03293.5prime
CAGTCGACATGGGCAAAAAGAACAAGGGCGGCGCCCCCAACCTGGGCCGC
CAGTTGATCAAGGATCGTTTCGGACACACTCAGCGCCGCAAGGTGGACAA
CGACACGATGCTGCACACCACCGAGCTGCAGGATGGCTACGACTGGGGCC
GCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTCGTTCCAGGCCTTCCTG
CGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGGCCGAGAAGCTGAACAT
CACGTTCGTGAACCCCAAGCAGCGCGTTGGACTGCTGAGCAAGACGCAGG
AGCAGCGCATGCACCAGAAGCACGACGAGCACCGTGACCAGCTCAAGATC
CCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCGCCGAGGAGCTAGTGCG
AGCCGAGAACGAGGCATTTCTCGACTGGCGCCGCGACCTGGCGCTGCTGC
AGGAGGACGAGGAGATCTTGATGACTCCGTATGAGAAGAACCTGGAGTTC
TGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTGACGTCGTTGTGCAGAT
CGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGCGCCGACCTTGAGCGCT
ACGTAAAGGAGGTGGAACCTAGCAAGATGAACATGATCCTGGTAAACAAG
TCGGACCTGCTCACTGAGGAACAGCGTCGCCACTGGGCGGAGTACTTTGA
CAGCGAGGGTATTCGCACGGCCTTCTACTCGGCCACGCTGGTAGAGGAGG
AGTTGAAGCGGGAGGCGGAGGAGTGCCTGGATTCCTTTCCCGAGGTGCAA
CAGCTGCGCAGAGCAGTTGAGGAGATAAACAGTCGTTGGATAGCGTGGAG
GACGCTTTGAACGTTATCGAGCAGAAATATAAGACGATTCCCGAGACTCA
AAACGATGAGCTGCCACGATTGCCCGGGGACAGAACAGTCCCCGACTGCT
GTCCCGCCTGGAGCTCATTGAGTTCCTGCGAAACATCTACACGGTCCCGG
CACACAGAGCAGCACGTGACGTCGGAATGGTCCGCTACCCAACGTTGGCA
AAGTAGCACATCAACTCGCTGATGACAGTGAAGAAGGGGTTCGTTCGGCA
CGCCGGCAACTTAAGCATCCGAGCTTCCTGGACAGACATACT
UFO03293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..1213 | 8..1106 | 5250 | 98.8 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..1213 | 8..1106 | 5250 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1462947..1463940 | 1095..110 | 4530 | 98.7 | Minus |
| X | 23542271 | X | 1464014..1464116 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:00 has no hits.
UFO03293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:12 Download gff for
UFO03293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 91..1209 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:05 Download gff for
UFO03293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 99..1217 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:13 Download gff for
UFO03293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 99..1217 | 1..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:13 Download gff for
UFO03293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1462930..1463939 | 111..1109 | 98 | <- | Minus |
| X | 1464014..1464122 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:05 Download gff for
UFO03293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1356963..1357972 | 111..1109 | 98 | <- | Minus |
| arm_X | 1358047..1358155 | 1..110 | 97 | | Minus |
