UFO03302.5prime Sequence
1085 bp (958 high quality bases) assembled on 2009-02-03
> UFO03302.5prime
CAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAAAGCTCAGG
CACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTGACCAGTCT
GGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGATCACCGGCG
GCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTTCCAAGGAG
ATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAACCTGCCGGA
GGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACGAAGGTAACGA
CGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACGGACAGTTC
TGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAAGTCGCTTA
CCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAATTCCACAG
TCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGAAGAACGGA
GGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTATGCCGCCAG
CATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGCGGACGTCA
CTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCAGGCGGGCC
GTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAGGAGCCAAT
ACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATACCTTGGGGC
CTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACCGCAATGT
GCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATGGTCATCG
CTGGTGTAGCGTGATCATGATGAGCTGGTTAGCCATGTGCAAGGATACTT
TGTGGAGACAAAGCCATCTGGGAAACGGAATCCCTTGAGACTCGGGACCT
AGCAGTAGATACGTCTATTGCACAATACACTGCGATAGTAAAGACAATGC
GAATCCCATCTATGCGCCGCTGGCTACGAGCTGCATGTATTCTCGATTGA
GCTGTTTCCCACCAGGACAGAACTCGGTCCTGGGC
UFO03302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8728-RA | 1935 | CG8728-RA | 158..1243 | 7..1069 | 4770 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7937961..7938375 | 859..444 | 2030 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7938437..7938819 | 443..61 | 1900 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7937776..7937899 | 982..863 | 380 | 92.7 | Minus |
| 2R | 25286936 | 2R | 7938898..7938957 | 66..7 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:39 has no hits.
UFO03302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:51 Download gff for
UFO03302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 209..1193 | 1..982 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:49 Download gff for
UFO03302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 154..1138 | 1..982 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:00 Download gff for
UFO03302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 154..1138 | 1..982 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:00 Download gff for
UFO03302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7937762..7937902 | 861..993 | 92 | <- | Minus |
| 2R | 7937959..7938375 | 444..860 | 99 | <- | Minus |
| 2R | 7938437..7938815 | 65..443 | 100 | <- | Minus |
| 2R | 7938900..7938961 | 1..64 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:49 Download gff for
UFO03302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3825267..3825407 | 861..993 | 92 | <- | Minus |
| arm_2R | 3825464..3825880 | 444..860 | 99 | <- | Minus |
| arm_2R | 3825942..3826320 | 65..443 | 100 | <- | Minus |
| arm_2R | 3826405..3826466 | 1..64 | 95 | | Minus |
