UFO03303.5prime Sequence
1073 bp (957 high quality bases) assembled on 2009-02-03
> UFO03303.5prime
CAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGGCTCTTCTG
AGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATGGATCTCTA
TATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACAGCTGGCAG
ATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCAATGCGCTC
GATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCCTCCGCTCA
CCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATGCGTACAGA
ACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACTCCATTATC
AAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAGAGCACCTA
CAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGGTTTGGCAC
AATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACACTCTGTGTA
ACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACACAGAATAC
TTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAATCGCATTA
GGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTACCTCCAAA
GTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAATAAGGTGAT
CTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATATGTTTCTC
TGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCTTCAAGTTT
GTAACCAATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGTGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAA
TCATATCATAATCATAATCAACACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGATTCCTCACCAATAAAAAACGCCCGCGCACGGACGGTCTGAA
CAAATCCAGATGGAGTCTGAGTCATACTGATCTATCACAGAGTCAGCGAG
CTCGAATCCATACGCCCCGCCTG
UFO03303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42807-RB | 2101 | CG42807-RB | 222..1063 | 1..842 | 4180 | 99.8 | Plus |
| CG42807-RA | 957 | CG13335-RA | 7..848 | 1..842 | 4180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13572030..13572538 | 509..1 | 2515 | 99.6 | Minus |
| 2R | 25286936 | 2R | 13571633..13571966 | 842..509 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:33 has no hits.
UFO03303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:48 Download gff for
UFO03303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13335-RB | 1692..2542 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:49 Download gff for
UFO03303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42807-RA | 3..853 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:57 Download gff for
UFO03303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42807-RA | 7..857 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:57 Download gff for
UFO03303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13571624..13571965 | 510..852 | 98 | <- | Minus |
| 2R | 13572030..13572538 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:49 Download gff for
UFO03303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9459129..9459470 | 510..852 | 98 | <- | Minus |
| arm_2R | 9459535..9460043 | 1..509 | 99 | | Minus |
