UFO03306.5prime Sequence
1164 bp (1017 high quality bases) assembled on 2009-02-03
> UFO03306.5prime
CAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGCTGACCCTG
TGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAACGGTCTCC
GACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTACTTGATAG
TGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGTTCGATAAT
GCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATTCCCGCATC
CGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCACCTTCTCGG
GCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGCTGGGCATC
GGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCCAACGAGTT
CCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAGTCTCACGA
CCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCGAGATGTAC
TTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTGATTGTCAT
TCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAATGGAGCTCA
CCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGATCAGGATT
CTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACGGCTGTGGC
AGTCCTGGCACCGGCAATTGCTCTGTCTAAAGCCACGGGACTGGACACCA
AAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACTCCTCACAG
GGAGGCATGAAAGGCTGTAGTCATTGCCGACTCCTTCCAGGCTGCTGTCC
TGGCTGTATCCTTGGTACTGATCGTGGCTTGGGCTGCTTCTACAGTGGCA
ATCCCATCCAGGTCTTTCAGACTGCTTCCGATCACAATCGCTTGGAGTTC
TTCAACATGATCCCGATCCCACACACGTCACACCGTCTGGTCGGTGGTCA
TTGTGCTTTTTCTACTGGACCTCGCTGTTCTGCACCACCAGCGTCCGTTC
AGAAATGCATGTTCTTGAGTCTGAGCTAGCAGATGCTCTTGGGCTTTGCA
TTATCCGCCTAATGGGCTTCCGCTGAACTTCACCGGTCGTATGTCTCTCA
CCCATATGCGAACT
UFO03306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5687-RB | 3115 | CG5687-RB | 765..1904 | 9..1131 | 5150 | 97.7 | Plus |
| CG5687-RA | 2752 | CG5687-RA | 402..1541 | 9..1131 | 5150 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1935612..1936280 | 677..9 | 3345 | 100 | Minus |
| 3L | 28110227 | 3L | 1935387..1935554 | 841..673 | 780 | 98.8 | Minus |
| 3L | 28110227 | 3L | 1935214..1935338 | 955..832 | 545 | 97.6 | Minus |
| 3L | 28110227 | 3L | 1935041..1935155 | 1068..959 | 335 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:51 has no hits.
UFO03306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:47 Download gff for
UFO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1483 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:12 Download gff for
UFO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1483 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:11 Download gff for
UFO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1483 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:11 Download gff for
UFO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1935040..1935159 | 956..1069 | 93 | <- | Minus |
| 3L | 1935214..1935329 | 841..955 | 99 | <- | Minus |
| 3L | 1935388..1935549 | 678..840 | 98 | <- | Minus |
| 3L | 1935612..1936284 | 1..677 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:12 Download gff for
UFO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1935040..1935159 | 956..1069 | 93 | <- | Minus |
| arm_3L | 1935214..1935329 | 841..955 | 99 | <- | Minus |
| arm_3L | 1935388..1935549 | 678..840 | 98 | <- | Minus |
| arm_3L | 1935612..1936284 | 1..677 | 99 | | Minus |
