UFO03307.5prime Sequence
1139 bp (1047 high quality bases) assembled on 2009-02-03
> UFO03307.5prime
CAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAGCCGCTAGC
GCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGCTGGAACAC
CCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAAGCGCACGC
TGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCGAGGAGTTC
GACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGTGCTCTCGA
CTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGATGACTTTG
CCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCGGAGTGCGA
TATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTACCGCATGGT
GAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGCGCCCCACT
TGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGTGGCAGGTT
CCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCCGGCGATCG
CAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCTCGAACTGT
TCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCTACTATGAT
GGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTGACTGCCGC
TCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGAGCTGCTGA
AGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCAAGGTCAAG
GACCATATCTCCGGCAAGGAGTTCACCGTGAAGGCCAAGTGCATTGTTAA
TGCCGCCGGTCCCTTCACGGACTCCATCCGCAAGATGGACAACCCCACGG
TGAAGAGCATCTGCTGCCCAGTTCCGGAGTTCATATCGTACTGCCTGGCT
ACTATAGCCCGATCAGATGGGTCTGCTGGATCCCTCCACTTCCGACGGCC
GCGTCATCTTCTTCTGCCCTGGCAGAGGCAGACGATTGCGGGCACCACGG
ACTTGCCTGGCGAATCCCCCACATCCACGCCCACGAAGACGAGATTCAGT
TATCCTCACGAGATCAAGACTATCTGAAGTGAATGAGTA
UFO03307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpo-1-RD | 2637 | CG8256-RD | 332..1465 | 5..1128 | 5285 | 98.3 | Plus |
| Gpo-1-RA | 2433 | CG8256-RA | 128..1261 | 5..1128 | 5285 | 98.3 | Plus |
| Gpo-1-RB | 2492 | CG8256-RB | 187..1320 | 5..1128 | 5285 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15859360..15859939 | 1064..488 | 2675 | 98.6 | Minus |
| 2R | 25286936 | 2R | 15860375..15860531 | 266..110 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 15860007..15860119 | 487..375 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15860195..15860305 | 374..264 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 15860599..15860706 | 112..5 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:40 has no hits.
UFO03307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:44 Download gff for
UFO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RA | 356..1405 | 1..1048 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:22 Download gff for
UFO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RB | 184..1233 | 1..1048 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:12 Download gff for
UFO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RB | 184..1233 | 1..1048 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:12 Download gff for
UFO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15860601..15860709 | 1..110 | 97 | | Minus |
| 2R | 15860377..15860530 | 111..264 | 100 | <- | Minus |
| 2R | 15859376..15859939 | 488..1048 | 99 | <- | Minus |
| 2R | 15860007..15860119 | 375..487 | 100 | <- | Minus |
| 2R | 15860195..15860304 | 265..374 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:22 Download gff for
UFO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11746881..11747444 | 488..1048 | 99 | <- | Minus |
| arm_2R | 11747512..11747624 | 375..487 | 100 | <- | Minus |
| arm_2R | 11747700..11747809 | 265..374 | 100 | <- | Minus |
| arm_2R | 11747882..11748035 | 111..264 | 100 | <- | Minus |
| arm_2R | 11748106..11748214 | 1..110 | 97 | | Minus |
