UFO03308.5prime Sequence
1144 bp (1018 high quality bases) assembled on 2009-02-03
> UFO03308.5prime
CAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGAGCTCGAGA
AATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGGCAGGCAAG
GAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAGGCGGGACT
ACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACGAGGACGAG
GAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAGTGGATTGC
CTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGCCCAATACA
AGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGGATCTCAAC
CTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCCCAACAACT
GATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCTCTTCCACT
TGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGCAGGAGGAG
CTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCTTCGATGCA
CTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAAACGGGTGC
TGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGGCCTTGTGT
TTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTGGATGTGTA
TCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAAGGCTTGCA
ATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCAGGAAATCAAGAAT
ATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGCGTCACAACTTGGT
CGTTTTTCGGACGGTGAAAGGGCATTGAGAGTCCTGCCAGGATTATTGAA
TATCATTCCTGAGGCTCGCTTGAATCTGGCTATATACTATCTGAAGCAGG
CGATGTTCAGAAGCTCATGCTCTGATGAAGGAACTACAGCAACTCGCCGC
ATGAGTACATACTCAAAGGAGTGGTCCATGCCGCCCTGGGGCCAGCAATT
GGGATCGAAAGAGCACATCAGGACGCCAAGCAACCTTGCCATTTGGGTGG
GCAGTTCCGCCACAGAGTGTGTACACCTATACCGGTCGTCGAAT
UFO03308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4525-RA | 1881 | CG4525-RA | 81..1215 | 9..1140 | 5270 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15775885..15776771 | 175..1057 | 4130 | 99 | Plus |
| 3R | 32079331 | 3R | 15774559..15774724 | 11..176 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:44 has no hits.
UFO03308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:43 Download gff for
UFO03308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4525-RA | 122..1261 | 9..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:53 Download gff for
UFO03308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4525-RA | 122..1261 | 9..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:18 Download gff for
UFO03308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4525-RA | 81..1220 | 9..1144 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:18 Download gff for
UFO03308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15774552..15774724 | 1..176 | 97 | -> | Plus |
| 3R | 15775887..15776771 | 177..1057 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:53 Download gff for
UFO03308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11600274..11600446 | 1..176 | 97 | -> | Plus |
| arm_3R | 11601609..11602493 | 177..1057 | 99 | -> | Plus |
