UFO03309.5prime Sequence
1110 bp (1030 high quality bases) assembled on 2009-02-03
> UFO03309.5prime
CAGTCGACATGGAAAGTTTCTGGCAGGAAGTGAAGTCTCTGCTGAAGACC
GTCTTCTGCTTTGTGGTGGCTATGATGCTAGTGCCTTTGCTGATGTTATC
ATTCCTGTGTGCTCACTTTGGCAACGAACTATCCAACTATGTGCTGAGCA
TCAAGTACCCGAACCTGACCATCTCAAAGTCGAAGAAGATCCGCACCTTA
ATCGACACGCCGAAGAATGCGGGCGTATTTCACTTCCTGCTGCAAGTGGA
GGGCGACTGTGACTTCGAGCGGATACGGATGGCCTATGCCCAGCATCTGA
CTGACCTGAGGGACAAGACCGGGATGCTCAGGTTCCCCAAGCTGCGTCAA
AAACTTGTCACCTGTTGGGGGCATTATGCGTGGGTGAATGACAGCAGCGG
CTTCAACATCAACAACCACGTCTTACTCAGCACCCACAAGTATCGAGGTC
GTCCGGTTAGCGAATCAAATATTCAGGAGTATGTCAGCGAGCTGGCCACG
AAGTACATCCCATCCGATCTCCCCCAGTGGCAGGTGATCGTGATCCCCAA
CTCGGATAGCACACAGCCCTACTACATACTCATTAAGCTGCACCACCTGA
TAATTGCCGAGGAGGAGGATCTGCATGTGAGTGAGATGCTCCTGCTTCAG
GATCCCCATAAGAAAACCACAATGACCCTAAGCGATGGATTGGATTGGGG
ACAGTTCGAGTCCAAAACTTTCCCGCTTTGTGCGAAAGCCGGAACACATA
AGCAGACTCATCAATCATATAATCCATCTTATCATTTGCCGTTGGCAAAA
GTTCATCTACGAATTTGAATCTCTTGAAACCCCCGATGGTTCAACGTCCA
GTGATCAGGGTGGGAAACCTAAGCCAGTTGATGTCGTTGGTCGTAATTGT
CCTGGTGAATGTAATTTTGGGCTATATAAGGAGTCGACTATGCTTAAGAA
ACTGAAAAGGCGTTCAGTCAGCTACCGCAATGAGTGGGTCGGTTTTCAAA
CAATGCCGATGCTGCTGAATAGGGAGTAGATCAAGAAATCTTATGGTCGC
TGCAGAAATGCATCTATAGAGCATGCAGCACTATTTGGCAAGGCCTTGAA
CCGTCCTGGC
UFO03309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2301 | CG33120-RA | 154..1255 | 9..1099 | 5045 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18842530..18843162 | 1027..394 | 2875 | 98 | Minus |
| 2L | 23513712 | 2L | 18843219..18843507 | 397..109 | 1445 | 100 | Minus |
| 2L | 23513712 | 2L | 18844256..18844351 | 110..15 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:52 has no hits.
UFO03309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:41 Download gff for
UFO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 132..1233 | 9..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:44 Download gff for
UFO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1255 | 9..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:17 Download gff for
UFO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1255 | 9..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:17 Download gff for
UFO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18843219..18843507 | 109..397 | 100 | <- | Minus |
| 2L | 18844258..18844351 | 15..108 | 100 | | Minus |
| 2L | 18842446..18843158 | 398..1099 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:44 Download gff for
UFO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18842446..18843158 | 398..1099 | 97 | <- | Minus |
| arm_2L | 18843219..18843507 | 109..397 | 100 | <- | Minus |
| arm_2L | 18844258..18844351 | 15..108 | 100 | | Minus |
