UFO03310.5prime Sequence
1126 bp (1015 high quality bases) assembled on 2009-02-03
> UFO03310.5prime
CAGTCGACATGTCCCTGCTGGCCTACGGCGAACCAGCAGAGTCCAGCGAA
ACGGACAGCCCGGCGGCGGAGGCGGAGCCGGACGTACTGGTCGATTTTAC
GGCCATGCTGCAGCGGCAAAGGCAGAACGGCGATTACGGCGGTTGGTTCG
GTTGCGACAGCAAAATGCAGACGACGCAATCCGATCAGGGCTACTATCTC
GAGCAATATGTGCTGGGCGTGCTCGATTTCAGTTCACAGTATGGCATCGA
TTACAGCATCTCGTATACGGCGGCCAATGTGATTGGCAGGCCAACGAAAT
TTCCCGCCTATGGCGATTATCCGGAGACCTTTCCCATGCGCACCTACGGC
GACTGGTGGCAACGGGCACCGTCCGCCACGCGTGAGATTCAGCCCCAGAA
TCTGCCGAAGTTGGAAACACATGACTATGTTGTTGTTTATTTCGAGGAGT
TTGTAGTGCCCACCGAAGTGGCCATCTTTGAGACCTTCAATCCGGGCGCC
GTTGTACGCATTTGGGCGTACGGCCTGACCAAAAACTGGACCTGCCTGTG
GGAGGCAACGGAAAGCGATCTCTCCCGACCGCCGCCACTGGACTCGCGTC
GCTTTGCGCCGTCACTGAAGAAGACCACGATGCTAACGAAAACGCTGCGC
ATCGATTTCAATCACAGCCGACTCAATTACTATACGGAAATCGATGCCAT
TATGCTGTGCGGTCGAACGGTCACCAAAACGCAAAACCTACTGGCCAAGC
AGCAAATTACGCAGCACAGCCGGACGCTAGTGTCGCCGCCACCGGATGCT
ATTGGCTCAACGTCCGGCGACGGCAGTGGCGGATCAATTAGCCACAAGCT
GCGCACCCTTAAGTTCCAGCCGAATTGCGGCGAAGACGGTGCCACCAAGC
TGCACGAGTTCATCAACAACGATCTTAGTCAGTTTCTGGCGGACATTGTT
GTGAATGGCGAGGCGGCGGCGCCACAATCTGTCTAACGATCTGCATTCGA
GATCCTATTGCGCAATACTCAGCTACTGGACTGAGTCGCTGTTCCGCGTG
GATCACGTGTCCGCACTTCTAACGACATCTCCAGCATCGCTGCTCTATGC
GAGAAATCAGCCTGAAGCCTACTGGG
UFO03310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbxl4-RA | 2894 | CG1839-RA | 600..1726 | 8..1126 | 5195 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14235956..14236441 | 1119..641 | 1730 | 95.1 | Minus |
| X | 23542271 | X | 14236994..14237324 | 338..8 | 1655 | 100 | Minus |
| X | 23542271 | X | 14236507..14236715 | 640..432 | 1045 | 100 | Minus |
| X | 23542271 | X | 14236846..14236940 | 432..338 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:04 has no hits.
UFO03310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:57 Download gff for
UFO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 593..1726 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:52 Download gff for
UFO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 593..1726 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:05 Download gff for
UFO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 593..1726 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:05 Download gff for
UFO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14235948..14236441 | 641..1126 | 95 | <- | Minus |
| X | 14236507..14236714 | 433..640 | 100 | <- | Minus |
| X | 14236846..14236939 | 339..432 | 100 | <- | Minus |
| X | 14236994..14237329 | 1..338 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:52 Download gff for
UFO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14129981..14130474 | 641..1126 | 95 | <- | Minus |
| arm_X | 14130540..14130747 | 433..640 | 100 | <- | Minus |
| arm_X | 14130879..14130972 | 339..432 | 100 | <- | Minus |
| arm_X | 14131027..14131362 | 1..338 | 98 | | Minus |
