UFO03311.5prime Sequence
1071 bp (988 high quality bases) assembled on 2009-02-03
> UFO03311.5prime
CAGTCGACATGGGTGGAATTCAGTACATCTGCCTGCTGGCTTTCATAATA
GGAGCATCATTATTGACAACAATCGATGCTAATTCGAGCCGAGATGTTAA
TGCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATATGTAGAAA
CGGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACAATCTATTA
GGTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCTCAACTTCT
GGATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCTCGCCCTGA
AGATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCCTGCCTAAT
AATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAACCACTTCC
GGAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAAGGGAAATC
GAGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCCACTACAGG
AACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAAACAGTGCC
GGCTGCGTGGTCCATTAGTAAGGAGCTGTATGAGCCCGATCACATTCAGA
TCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCCTCCCTCAG
TGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCGCAATCAAT
GAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGATCAACCTTC
AGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACCAGCCCGGT
GGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGTGCTCTGGC
CGTGGCTGATTGCAATTTCGTGGCGCCGAACAACTCAACCAGGGCCACGG
GGTCCTTGGATCTATCGCAACTCTATGGTTTCACGCAGCGGCGGAGAAGA
AGTTGCGTGTTCTCGAGGCGGTTTGTAAGTTCACTCCTCGTGGAAAATCG
ACACGCTCTGCCATCGCACGAATACGAGACATCGTTCTGCGCCAGGCAAC
ATTTGGTGATGGACCTGCCTG
UFO03311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irc-RB | 2390 | CG8913-RB | 202..1278 | 9..1068 | 4830 | 97.6 | Plus |
| Irc-RA | 2341 | CG8913-RA | 202..1278 | 9..1068 | 4830 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17004467..17004801 | 181..515 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 17004864..17005053 | 514..703 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 17005170..17005351 | 703..883 | 860 | 99.5 | Plus |
| 3R | 32079331 | 3R | 17004204..17004300 | 85..181 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 17003076..17003151 | 9..84 | 380 | 100 | Plus |
| 3R | 32079331 | 3R | 17005432..17005508 | 893..968 | 305 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:57 has no hits.
UFO03311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:54 Download gff for
UFO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 193..1160 | 1..968 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:47 Download gff for
UFO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 195..1162 | 1..968 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:20 Download gff for
UFO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 195..1162 | 1..968 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:20 Download gff for
UFO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17005170..17005351 | 703..883 | 99 | -> | Plus |
| 3R | 17005424..17005508 | 884..968 | 95 | == | Plus |
| 3R | 17003069..17003151 | 1..84 | 95 | -> | Plus |
| 3R | 17004204..17004300 | 85..181 | 100 | -> | Plus |
| 3R | 17004468..17004801 | 182..515 | 100 | -> | Plus |
| 3R | 17004866..17005052 | 516..702 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:47 Download gff for
UFO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12828791..12828873 | 1..84 | 95 | -> | Plus |
| arm_3R | 12829926..12830022 | 85..181 | 100 | -> | Plus |
| arm_3R | 12830190..12830523 | 182..515 | 100 | -> | Plus |
| arm_3R | 12830588..12830774 | 516..702 | 100 | -> | Plus |
| arm_3R | 12830892..12831073 | 703..883 | 99 | -> | Plus |
| arm_3R | 12831146..12831230 | 884..968 | 95 | == | Plus |
