Clone UFO03313 Report

Search the DGRC for UFO03313

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:33
Well:13
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG12290-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03313.5prime Sequence

293 bp (6 high quality bases) assembled on 2009-02-03

> UFO03313.5prime
CAATCCACTTGGCCATAAACCTCCTGATCCTGGCCCTGCTGCTCGTCTCA
TTCCTGATCAACCGGCTGGCGCTGTGTGCCTTTTGGATAACGCCTGGCTT
GATCACCACCGCCAGTCGCTTGACGATCATCCTGCTGGCCATCTTTCTCT
TTGGGTGCTGCTTCTTGGCCCCCACTTTGTTCCGGGGACTGTCGGGAAAG
TCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTCTTCTCGAA
GCCGGGAAACCATATGGTGATACTTCGTCGCAATGGCCAGCTG

UFO03313.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-RB 4453 CG12290-RB 459..742 10..293 1165 94 Plus
CG12290-RA 3082 CG12290-RA 459..742 10..293 1165 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26230706..26230989 10..293 1165 94 Plus
Blast to na_te.dros performed on 2014-11-28 20:48:06 has no hits.

UFO03313.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:35 Download gff for UFO03313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 455..738 10..293 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:21 Download gff for UFO03313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 459..742 10..293 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:37 Download gff for UFO03313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 459..742 10..293 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:37 Download gff for UFO03313.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26230706..26230989 10..293 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:21 Download gff for UFO03313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22056428..22056711 10..293 94   Plus