UFO03314.5prime Sequence
1139 bp (1017 high quality bases) assembled on 2009-02-03
> UFO03314.5prime
CAGTCGACATGTGTGGCATATTCGCGTACCTAAACTACTTGACGCCCAAG
TCGCGACAGGAGGTCCTGGATCTCCTGTTGCAGGGACTGAAGCGGCTGGA
GTACCGCGGCTACGACTCCACGGGCATAGCCATCGATGCGCTGAACTCTG
GCGAGGCACAGTCCATAATGCTGGTGAAGCGCACCGGGAAGGTGAAGGTG
CTGGAGGATGCGGTGGCGGAGGTGTGTCGCGGCCAGGACTACTCGCTGCC
CATCGACACCCACATAGGCATAGCACACACGCGCTGGGCCACCCACGGTG
TGCCCTCCGAGGTCAACTCGCATCCGCAGCGATCCGATGAGGATAATAGC
TTTGTGGTGGTGCACAATGGCATTATAACCAACTACAAGGATGTGAAGAC
GCTGCTGGAGAAGCGCGGATATGTATTTGAGTCCGACACGGACACGGAGG
TGATTGCCAAGCTGGTACACCACCTGTGGCAGCAGCATCCTGGCTACACT
TTCGGCGAGCTCGTGGAGCAGGCCATTCAGCAGCTGGAGGGCGCCTTCGC
CATCGCCTTCAAGTCGAAGCACTTCCCGGGCGAGTGCGTGGCCTCCAGGC
GAGGCTCACCGCTTCTGGTGGGCATCAAGGCCAAGACCAAGCTGGCCACC
GATCACATACCCATCCTGTACGCCAAGGCCCATCGGCCACATGGTCAGCC
GCAGCAGCACGCCTATCAACTATTGCCGCCCGGCGATTGCAACGCCGAGT
TTCAACCGCTGGAGCGCAAGGAAGTGGAGTACTTCTTCGCCTCGGACGCA
TCGGCTGTTATAGAGCACACGAATCGGGTGATTTACCTGGAAGATGACGA
CGTGGCCGCCGTCAAGAGCGATGGCACGCTCAGCATTCATCGCCTAAACA
AATCATCCGATGATCCGCACGCCCGCGAGATCATCACGCTGAAAATGGAG
ATCCAGCAGATCATGAAGGCAACTACGACTACTTTATGCTGACGAGATCT
TCGAGCAGCGAATCCGTGGTCCACACCATGCGCGGCAGGATGAGTCGATA
CCGCGACGGTGGTTCTGGGTGGCATCAGGAATACAAAACGGAGAATAAAG
GCGCGCTGCCGCCGCTGATGCTATTGCCGTGCCGTAACT
UFO03314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 220..1338 | 9..1123 | 5190 | 98 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 596..1010 | 258..672 | 455 | 74.6 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 394..808 | 258..672 | 455 | 74.6 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1124..1392 | 768..1035 | 390 | 77.7 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 356..465 | 9..118 | 205 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28338472..28339546 | 1077..9 | 5040 | 98.8 | Minus |
| 3R | 32079331 | 3R | 4133499..4133913 | 258..672 | 455 | 74 | Plus |
| 3R | 32079331 | 3R | 4136484..4136614 | 909..1035 | 190 | 81.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:46 has no hits.
UFO03314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:34 Download gff for
UFO03314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 214..1350 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:39 Download gff for
UFO03314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 211..1347 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:15 Download gff for
UFO03314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 211..1347 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:15 Download gff for
UFO03314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28338419..28339550 | 1..1132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:39 Download gff for
UFO03314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24164141..24165272 | 1..1132 | 97 | | Minus |
