UFO03315.5prime Sequence
1107 bp (1001 high quality bases) assembled on 2009-02-03
> UFO03315.5prime
CAGTCGACATGGCCAACAACAACTACGCCGGGTTTAACTACGGCGGCACC
CAGTACAATACGGGCCAAGTCTCGTACCCGGCGGTAACCAATGCCACCTA
CGCGAATGCGGCCGCCTATCAGAATGCCGCTGTGGCCGCCGGACAGGGTG
GTTATGGCGGAGCAGCAGGAGCGGGCGCTGGCGCCACCTCTGGCCCTGGG
GCGGGGGGTTATGGTGGCTACGGCGACTATCGAAGTGCCATGCAATACGA
CGCCACCAAGACATTCTATCAGCAGTCGCCGGCCAGCTACAACGCCTCCG
GTTCGACAGCCTCGGTCAGCAAGACGCACTACTCGGCTCCGCCAGTCAAG
AATCAGGTCAAGGGCAAGATGGACAAGTCGAACGGTGGTCCCAAGCCCCC
TAGTTCGGCTCCTCCGGCGGGCAACAATTACAGTGGCTATGATACAGCAC
TCTACAATGCGGCAAGCATGTATGTGGCCCAACAGCATCAGGGCAATCCA
AACCAAAAACCAAATGGCGGCGCCAATAACTGGTATCAGCGTAAGATGGG
AGCCACCATACCAGGAGCAACGGCCATAAGGGGTATGCGTCCGAAGGCAC
CTCCACGTCCCCAGCAGCTGCACTACTGCGAAGTGTGCAAAATCTCGTGC
GCCGGGCCGCAGACTTATCGCGAGCATCTGGAGGGTCAGAAGCATAAGAA
ACGCGAGGCTTCGCTGAAGATGTCCGCTAGTGCCAACAGTGCTACACAAA
ATCGTGGTAACAACTACCACTGCGAGCTGTGCGATGTAACATGCACTGGT
ACGGACGCATATGCCGCCCATGTACGCGGAGCCAAGCATCAGAATGTGGT
CAAGTTGCACCAGAACTGGGCAAACCCATTCCCTCGGAGAGCCCAAAAGA
TGGGCAGATCAACTTTGTGCCCGCTGCTGCTGCGAGCTGTGTGCAGACCG
AGTGGCGCGACGAAGCGATGCAGCTGGAGATCTCGATGATATCTGACGAT
TCGCTGGGCGAAAACACGACAACATTAGCCAGTAGCGGCGAGTTATTGAA
AAGTCAAGACGACAGCAGATTTTGGCTTATTGCAGCTGTGGCATTGTAGT
TCAAGAC
UFO03315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RD | 3240 | CG5215-RD | 226..1352 | 9..1104 | 4825 | 96.8 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..1218 | 9..1104 | 4825 | 96.8 | Plus |
| Zn72D-RF | 3423 | CG5215-RF | 409..1535 | 9..1104 | 4825 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16110844..16111869 | 1018..9 | 4430 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:48 has no hits.
UFO03315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:32 Download gff for
UFO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RB | 163..1250 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:47 Download gff for
UFO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 401..1488 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:36 Download gff for
UFO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 401..1488 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:36 Download gff for
UFO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16110790..16111876 | 1..1068 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:47 Download gff for
UFO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16103890..16104976 | 1..1068 | 97 | | Minus |
