UFO03317.5prime Sequence
1167 bp (1030 high quality bases) assembled on 2009-02-03
> UFO03317.5prime
CAGTCGACATGGACCAGCCCGACGACCATTTCCGCTACATACACAGCTCC
TCGCTCCACGAGCGAGTGCAAATCAAGGTAGGGACGCTCGAGGGGAAAAA
GCGCCAGCCGGACTATGAGAAACTGCTAGAGGATCCGATCCTGAGATTCT
CGGGCCTGTACTCCGAGGAGCACCCCTCGTTCCAGGTGCGCCTGCAGGTG
TTCAACCAGGGCAGACCCTACTGCCTCCCAGTGACCAGCTCCTACAAGGC
GTTCGGCAAGCGATGGAGCTGGAACGAGTGGGTGACGCTGCCGCTGCAAT
TCTCCGACCTGCCCAGAAGCGCCATGCTGGTGCTGACCATCCTGGACTGC
TCGGGCGCGGGCCAGACCACGGTCATTGGAGGCACCTCCATCTCAATGTT
CGGCAAGGACGGCATGTTCCGCCAGGGAATGTACGACTTGCGAGTGTGGC
TGGGGGTCGAGGGCGATGGCAACTTTCCCAGTCGCACGCCCGGCAAGGGC
AAGGAGTCGTCCAAGTCGCAGATGCAGCGCCTAGGAAAGCTGGCCAAGAA
ACACAGGAACGGCCAGGTGCAAAAGGTGGACTGGCTGGACAGACTGACGT
TTCGCGAAATCGAGGTGATCAACGAGCGCGAAAAGCGTATGTCGGACTAT
ATGTTTCTTATGATCGAGTTTCCCGCCATCGTGGTGGATGACATGTACAA
CTACGCCGTGGTCTACTTCGAGCCGGAGGGTGACGTCAAATACAAGCTGC
CGGCCAAACCTAAGCTGGTTTCTGTGCCGGACTCCGAGATCCAAATGGAA
AATCTGGTCGAGCGCAAGCACCATCGATTGGCCCGTTCGGAGCGTTCAGG
CATCTCGGACAGAGATGCCAAGCCGACAGCCAGCATTCGCGATCAGCTCC
ACACGATTGTCTATAGGTATCCACCCACCTATGTTCTGAGCAGCGAGGAG
CAGATCTGGTGTGAAGTTTCGCTTTTATCTCTCCTCGCACAAAAGCTCTG
ACCAGTTCCTCAAGTGCATCAATTGAAGCTGAGACGAGTACGCAGCCCTT
TGGATGCTGGCAACTGGGCGCCATGACGTGAGGATGCTTGGGAGCTGCTG
ATCGACTTACGCACCGCAGGTGCGAAGTACCGGTATCCAATGGCAGACCA
CAAGAATCGGCGCCTCA
UFO03317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi3K59F-RA | 3164 | CG5373-RA | 82..1219 | 9..1126 | 5190 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23560719..23561340 | 80..701 | 3110 | 100 | Plus |
| 2R | 25286936 | 2R | 23561398..23561579 | 702..883 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 23561632..23561781 | 881..1025 | 535 | 96.7 | Plus |
| 2R | 25286936 | 2R | 23560573..23560643 | 9..79 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:26 has no hits.
UFO03317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:30 Download gff for
UFO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 73..1222 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:42 Download gff for
UFO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..1224 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:07 Download gff for
UFO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..1224 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:07 Download gff for
UFO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23561398..23561579 | 702..883 | 100 | -> | Plus |
| 2R | 23561635..23561885 | 884..1115 | 91 | | Plus |
| 2R | 23560566..23560643 | 1..79 | 94 | -> | Plus |
| 2R | 23560719..23561340 | 80..701 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:42 Download gff for
UFO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19448089..19448166 | 1..79 | 94 | -> | Plus |
| arm_2R | 19448242..19448863 | 80..701 | 100 | -> | Plus |
| arm_2R | 19448921..19449102 | 702..883 | 100 | -> | Plus |
| arm_2R | 19449158..19449408 | 884..1115 | 91 | | Plus |
