UFO03318.5prime Sequence
1099 bp (991 high quality bases) assembled on 2009-02-03
> UFO03318.5prime
CAGTCGACATGCTCATGCACACAACATCAATTTCCACAACGTCGACGGCC
ACCATGACCAACTCATCGTCCTCCGCCACGCCCACACCCGGGTCGACTTC
CTCCAACAACAGTGCCACGCTCGACGCGCTGCACCAGCAACAACAGCAGC
AGCACCAGCAGCATCAGCTGCAGCAACAACTGCAGCAGTTGCACACGAAC
GCCGCAAACAATTCACGGCCCCCCTCACGTGCCCCCTCCATTCTGGACAG
TCCGACCCTGGCGCGTGTGGAGCGGGCTCGTCTGCGACTGGAGCAGCAGG
AGCGGGAGCGGGAACGGGAGCGTAGCAGCCAGCGGGAGGTGGGCGGCGGC
AGCGGAGGAGGCGGCGGCGGTGGTAGCAGCACTGGCACTGGCAGCACCGC
CACAACCATGAATCGTGAGGATAGCCTGGAGCGCAGTATTTTGGATCCCA
AGCAATCCTTGCTGGCAGGACGCATTCCGGTGGCCTCCATGACAGGACCC
ATTAAACGCGGACTGCTCTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTG
GAAGGAGCGATACTTTGTGCTCACTCGTGACTACTTGCACTGCTTCAAAA
GAGCCTCGGGATCGGCCAATGAACGTGCCTCGGATATGGGACAGTTTATC
TTCAAGGTCAAGCTGGTGGACGTGGAGAAGGTGGAGTGGCTGATCGGCGC
TCCTACAGCGCCATTGGTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACT
CCGCTGCGATGATGGCCTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCA
CAATGACCTCCAGGAGCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCA
GATCCCGAGCCTCATTGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTC
CAGCATTTGGACTCGGAGCACTTACTCGAGTGCCTGACGATGCTGATGAC
GATGCACGTGTCTGCCCGCACAGATGAGCTGCAGTCTGACGTTATGGCGG
GCAATCCCTCTGTCTCGATCGTGCGATCTGATGCTGACACGAAACCCATC
TCACTGAACGCATCGACGACCTCGCACGCGAGATCCGCACAAGCATGCA
UFO03318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RG | 2766 | CG32982-RG | 347..1298 | 9..952 | 4570 | 99.2 | Plus |
| CG32982-RA | 2761 | CG32982-RA | 347..1298 | 9..952 | 4570 | 99.2 | Plus |
| CG32982-RH | 2682 | CG32982-RH | 347..995 | 9..657 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9127023..9127466 | 9..452 | 2220 | 100 | Plus |
| 2L | 23513712 | 2L | 9161129..9161269 | 655..794 | 655 | 99.3 | Plus |
| 2L | 23513712 | 2L | 9161383..9161528 | 792..934 | 580 | 97.9 | Plus |
| 2L | 23513712 | 2L | 9154657..9154765 | 451..559 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 9156497..9156596 | 559..658 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:44 has no hits.
UFO03318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:28 Download gff for
UFO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RA | 333..1284 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:34 Download gff for
UFO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RA | 347..1298 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:02 Download gff for
UFO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RA | 347..1298 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:02 Download gff for
UFO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9161385..9161550 | 794..952 | 95 | | Plus |
| 2L | 9127023..9127466 | 9..452 | 100 | -> | Plus |
| 2L | 9154659..9154765 | 453..559 | 100 | -> | Plus |
| 2L | 9156498..9156594 | 560..656 | 100 | -> | Plus |
| 2L | 9161131..9161268 | 657..793 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:34 Download gff for
UFO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9156498..9156594 | 560..656 | 100 | -> | Plus |
| arm_2L | 9161131..9161268 | 657..793 | 99 | -> | Plus |
| arm_2L | 9161385..9161550 | 794..952 | 95 | | Plus |
| arm_2L | 9127023..9127466 | 9..452 | 100 | -> | Plus |
| arm_2L | 9154659..9154765 | 453..559 | 100 | -> | Plus |
