UFO03319.5prime Sequence
1162 bp (1042 high quality bases) assembled on 2009-02-03
> UFO03319.5prime
CAGTCGACATGGCTTCGATTAGCTTGCTGAACCCCAAGGCCGAGTTTGCC
CGCGCCGCCCAGGCTCTGGCCATCAATATCAGTGCCGCCAAGGGACTGCA
GGATGTGATGCGCACCAATTTGGGACCCAAGGGCACCGTTAAGATGTTGG
TTTCTGGCGCCGGCGACATCAAGATCACCAAGGATGGCAATGTCCTGCTG
CACGAAATGCAGATCCAACATCCGACTGCCTCTATGATTGCCAGGGCCAG
CACGGCCCAGGATGATTCCACCGGCGATGGAACCACCACCACTGTGATGC
TTATTGGCGAGCTCCTGAAGCAGGCCGATATCTATCTGTCCGAGGGACTG
CATCCTCGCATCATGACCGATGGATTCGAGAAGGCACGCGACAAGGCATT
GGAGGTGCTCGACCAGGTCAAGGTGCCCGTGGAGATCAACAAGAAGAACC
TGGTGGAGGTGGCCAACACAAGTCTGAAGACCAAGGTGCATCCCGCCCTT
GCCGATCTGCTTACGGACGTCTGCGTGAATGCCGTGCTGACCATTGCCAG
TGCCGATAAGACCAAGCCCGTGGACCTCCACATGGTGGAGCTGATGGAGA
TGCAGCACAAATCCGATACCGATACACAGCTGGTGCGTGGACTAGTCATG
GACCATGGTGCTCGCCACCCGGACATGCCGAAGCGTTTGGAGAATGCCTA
CATCCTTACGGCCAATGTCTCGCTGGAGTACGAGAAGGCCGAGGTCAACT
CTGGCTTCTTCTACAAGACCGCCGAGGAGCGTGAGGCCTTTGTGCGCGCC
GAGCGCGAATTCATCGACCAGCGTGTGAAGAAGGTGATCGAATTGAAGCG
CTCCGTGTGCGATGGCACCGACAAAACCTTCGTCCTGATCAACCAGAAGG
CATCGACCCCATCTCGCTGGACGCCCTGGCCAAGGAGGCATCCTGGCCTT
GCGTCGCGCCAGCGCCGCAACATGGAGCGTCTGTTCTTTGGCCTGCGGTG
GCACTGCAATGACTCCTTTGACGATCTGCAGAGAGCACTGGGATACGCCG
GGGTTGGGTGTTACGAGCATGTTTCTGGGCGAAAACAAGTACAACTTTCG
GTGAGAACTGCAAGAATCCCGCTTTCGTCAGGATCCGTGATCAAGTCACA
GCACGATACCGG
UFO03319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tcp-1zeta-RA | 1924 | CG8231-RA | 124..1260 | 9..1145 | 5245 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15747308..15748279 | 146..1116 | 4240 | 98 | Plus |
| X | 23542271 | X | 15746771..15746909 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:14 has no hits.
UFO03319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:27 Download gff for
UFO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 140..1282 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:55 Download gff for
UFO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 118..1260 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:56 Download gff for
UFO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tcp-1zeta-RA | 118..1260 | 1..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:56 Download gff for
UFO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15746765..15746907 | 1..145 | 97 | -> | Plus |
| X | 15747308..15748307 | 146..1145 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:55 Download gff for
UFO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15640798..15640940 | 1..145 | 97 | -> | Plus |
| arm_X | 15641341..15642340 | 146..1145 | 97 | | Plus |
