UFO03321.5prime Sequence
1075 bp (993 high quality bases) assembled on 2009-02-03
> UFO03321.5prime
CAGTCGACATGCGGATACGCGAAAAACGCAAGTTGCAGAGGGAGCTGAGG
GTGGAGAAGCGCGTGGAGAGGGAGAAAAAGGAGCACAAGGAGGCCTCCAA
GACGCAGGACAACAACAACAAGGCGAAGGCCACTGACACGGAGGTTCTCA
CACCAGCTCCTGCGCCTGCGCCTGCTCCACCAGCAGCACCCACTTCGACT
GCATCACCCACACCCACTAGCACGCACACCCCCAGCCTGCCGGCCGCCGA
GAAGGTGGCCTTCGACAATCGCATCAAGCGCAAGAATGTCCTGGCCCTCA
ACGAAAAGGTTGCTGCTCTGCGGGAATACGATCGGCTGCCGGTTTATAAG
CACGTTGGCCGGCTGTTCAACTGCAGCCCAGATCAGATCAAGCGGATCGT
GCAGCAGCGCGCTGAGATTCTGAACGCGTGGGATCAGCGAACCCGCAGGA
GCCAGGACGCCAAGACCATGGAGACGAAGACCGTCAGGGTCTCGATGTTG
GGCAAGGCCGTGTACGATTGGATACGCCGCATGATGTACTACAAGGACTT
CAGCATCTCCGACGGACTCATCCAGAAGATGGCGCTGCAGTTCAAGAGCT
CCATGAACCTGGCACATTTCTTTCCGCACCAGGAGTGGTGCGACAAGTTC
AGACGCACCTACAGCATCCAACACAGCGACACCAGACTGTTGAAGATAGG
CTACACGCAGGGCTACTCGGTGCAGATCAAGGACATCGTCAAGGACGTCA
TGTCGGAAAGCATGCCGGAAGTGGGCCACGGAACGGCGAGGAGGATGACG
AAGAGGTCAGCTTGGGCAGCCCGGTGAGCAGCCATCCCCGCAGCTATGTA
GAAGACGAGGATGACGAGGTGGATGTCGACGTGGCGGTATTAGCGGCGAG
ATGATCTGAGAGAGCCTGATGTCAAGCCCTCACTAGCGACTAAATTTGCA
GGGCTCTGAGCCCTTGCCGCTCTAGTAGACTGCCCCTCAGCTAACACACG
CAGCACACTCAAAAGTTCTCTGCACACCCATGTCGACAGCGCGACGCATG
ACATGAACATCACACTAGCCACGCT
UFO03321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 2329 | CG3371-RA | 403..1448 | 9..1031 | 4675 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 683879..684693 | 935..127 | 3800 | 98.9 | Minus |
| 3L | 28110227 | 3L | 685027..685147 | 129..9 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:09 has no hits.
UFO03321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:25 Download gff for
UFO03321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-RA | 393..1409 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:49 Download gff for
UFO03321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1413 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:43 Download gff for
UFO03321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1413 | 1..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:43 Download gff for
UFO03321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 683801..684691 | 129..1007 | 97 | <- | Minus |
| 3L | 685028..685153 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:49 Download gff for
UFO03321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 683801..684691 | 129..1007 | 97 | <- | Minus |
| arm_3L | 685028..685153 | 1..128 | 96 | | Minus |
