UFO03323.5prime Sequence
1074 bp (961 high quality bases) assembled on 2009-02-03
> UFO03323.5prime
CAGTCGACATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGCGGTGGCGC
CTCAAAACCATCGAGCATAAAGTCCAGCAGTATCGCCAGTCGACCAATGA
AACAGTTGTCGCCGACACGGAGTACGGCCAAGTGAGGGGTATCAAGCGTC
TATCTCTCTACGATGTGCCCTACTTCAGCTTCGAGGGTATCCCGTACGCC
CAGCCTCCGGTGGGGGAGTTGCGGTTTAAGGCCCCTCAGAGGCCCATTCC
CTGGGAGCGAGTTCGCGACTGCAGCCAGCCGAAGGATAAGGCCGTCCAGG
TGCAGTTCGTCTTCGATAAGGTAGAGGGCTCCGAGGACTGCCTCTATCTC
AATGTGTACACCAACAATGTGAAGCCCGACAAGGCTCGCCCGGTTATGGT
TTGGATTCACGGAGGAGGCTTCATTATCGGCGAGGCCAATCGGGAATGGT
ATGGCCCGGATTACTTTATGAAAGAAGATGTTGTTCTCGTCACGATACAG
TACCGACTTGGGGCTTTGGGATTTATGAGTCTTAAGTCCCCCGAGCTAAA
TGTACCAGGAAATGCTGGCCTCAAGGATCAGGTGCTGGCCCTCAAGTGGA
TCAAGAACAATTGCGCTAGTTTCGGCGGAGATCCCAACTGCATCACTGTT
TTTGGAGAGAGTGCTGGAGGCGCCTCCACTCACTACATGATGCTAACCGA
TCAGACCCAAGGGCTCTTTCATCGCGGCATCTTGCAGTCGGGCAGTGCCA
TTTGTCCTTGGGCCTACAACGGCGACATTACCCATAATCCCTACAGGATA
GCCAAGCTGGTTGGCTACAAGGGCGAGGACAACGACAGGATGTGCTGGAG
TTCTTGCAGACGTAAAGGCCAAGGATCTTATTCGCGTGAGGAATGTCCTG
ACACTGAGGACGCATGACAGATATGTTTGCCTTGGCCCATCCTGACCATT
CTCCACGCCCGATGGGTGATATCCAGCTCAAAGGAGATGATGAGACGCTG
AGTACTCATCCCATGTTTTATAGAACCTCGTACGAGCTGCTGTGGGTTCG
AGGTAAGCTTATGCCGCCAGGTGG
UFO03323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-RA | 2017 | CG1112-RA | 107..1208 | 5..1073 | 4625 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7520705..7521076 | 888..519 | 1760 | 99.5 | Minus |
| 3R | 32079331 | 3R | 7521366..7521682 | 372..56 | 1585 | 100 | Minus |
| 3R | 32079331 | 3R | 7521133..7521284 | 520..369 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 7523597..7523647 | 55..5 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:21 has no hits.
UFO03323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:39 Download gff for
UFO03323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 103..1133 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:59 Download gff for
UFO03323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 102..1132 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:53 Download gff for
UFO03323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 102..1132 | 1..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:53 Download gff for
UFO03323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7520584..7521075 | 520..993 | 96 | <- | Minus |
| 3R | 7521134..7521284 | 369..519 | 100 | <- | Minus |
| 3R | 7521370..7521682 | 56..368 | 100 | <- | Minus |
| 3R | 7523597..7523652 | 1..55 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:59 Download gff for
UFO03323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3346306..3346797 | 520..993 | 96 | <- | Minus |
| arm_3R | 3346856..3347006 | 369..519 | 100 | <- | Minus |
| arm_3R | 3347092..3347404 | 56..368 | 100 | <- | Minus |
| arm_3R | 3349319..3349374 | 1..55 | 94 | | Minus |
