Clone UFO03324 Report

Search the DGRC for UFO03324

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:33
Well:24
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG3499-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03324.5prime Sequence

1047 bp (1008 high quality bases) assembled on 2009-02-03

> UFO03324.5prime
CAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACCTGTACCTA
GGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGAACCAAGCT
GCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTCCACGTCCA
GCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGAGCCGTTCG
AGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTGAATGGCAT
TCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGACGAGCATGC
TGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGGCCACACAG
ATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCGCTAACCGG
TGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGATTCCAACTA
TTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGCTAAATCAG
ATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAAAAGCGCAA
TCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTCGCCCCAGC
GTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGACGGCTGCTG
GCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTGAAAATTGC
CTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTCTCCAAAAT
CAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCGTCGTGTTC
TTGGGCATTTTCCTGAGCTTCTTTACAACCTCCAATGGATCCGTATTTCG
CATACAACTGGGCAACCAGGTTGAAGTGGACCCTGAGGAGATCAACGTCA
CTTTTGAGGATGTCAGGGTTGCGACGAAGCCAAGCAGAGCTCAGGAGTCG
TTGATTTCCTGAGAGTCGGAAAAGTCTCAAATTTGGCGAAAGCTTCAAAG
GAGTGCTCCTGTTGGCCGCCGGGTACTGCAAAACACTGCTGCCGTGC

UFO03324.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RB 2503 CG3499-RB 107..1153 9..1041 4870 98.6 Plus
CG3499-RD 2940 CG3499-RD 306..1361 9..1041 4770 97.7 Plus
CG3499-RC 2515 CG3499-RC 107..1165 9..1041 4730 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22885414..22885812 433..35 1995 100 Minus
2R 25286936 2R 22885053..22885243 684..494 955 100 Minus
2R 25286936 2R 22884908..22885000 776..684 465 100 Minus
2R 25286936 2R 22884574..22884662 937..850 395 98.9 Minus
2R 25286936 2R 22884720..22884795 850..775 380 100 Minus
2R 25286936 2R 22885297..22885356 493..434 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:48:27 has no hits.

UFO03324.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:37 Download gff for UFO03324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 391..1445 9..1047 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:40 Download gff for UFO03324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 107..1161 9..1047 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:54 Download gff for UFO03324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3499-RB 107..1161 9..1047 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:54 Download gff for UFO03324.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22884449..22884661 851..1047 92 <- Minus
2R 22884720..22884793 777..850 100 <- Minus
2R 22884908..22885000 684..776 100 <- Minus
2R 22885054..22885243 494..683 100 <- Minus
2R 22885297..22885356 434..493 100 <- Minus
2R 22885414..22885811 36..433 100 <- Minus
2R 22885916..22885942 9..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:40 Download gff for UFO03324.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18771972..18772184 851..1047 92 <- Minus
arm_2R 18772243..18772316 777..850 100 <- Minus
arm_2R 18772431..18772523 684..776 100 <- Minus
arm_2R 18772577..18772766 494..683 100 <- Minus
arm_2R 18772820..18772879 434..493 100 <- Minus
arm_2R 18772937..18773334 36..433 100 <- Minus
arm_2R 18773439..18773465 9..35 100   Minus