UFO03324.5prime Sequence
1047 bp (1008 high quality bases) assembled on 2009-02-03
> UFO03324.5prime
CAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACCTGTACCTA
GGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGAACCAAGCT
GCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTCCACGTCCA
GCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGAGCCGTTCG
AGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTGAATGGCAT
TCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGACGAGCATGC
TGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGGCCACACAG
ATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCGCTAACCGG
TGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGATTCCAACTA
TTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGCTAAATCAG
ATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAAAAGCGCAA
TCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTCGCCCCAGC
GTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGACGGCTGCTG
GCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTGAAAATTGC
CTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTCTCCAAAAT
CAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCGTCGTGTTC
TTGGGCATTTTCCTGAGCTTCTTTACAACCTCCAATGGATCCGTATTTCG
CATACAACTGGGCAACCAGGTTGAAGTGGACCCTGAGGAGATCAACGTCA
CTTTTGAGGATGTCAGGGTTGCGACGAAGCCAAGCAGAGCTCAGGAGTCG
TTGATTTCCTGAGAGTCGGAAAAGTCTCAAATTTGGCGAAAGCTTCAAAG
GAGTGCTCCTGTTGGCCGCCGGGTACTGCAAAACACTGCTGCCGTGC
UFO03324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RB | 2503 | CG3499-RB | 107..1153 | 9..1041 | 4870 | 98.6 | Plus |
CG3499-RD | 2940 | CG3499-RD | 306..1361 | 9..1041 | 4770 | 97.7 | Plus |
CG3499-RC | 2515 | CG3499-RC | 107..1165 | 9..1041 | 4730 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22885414..22885812 | 433..35 | 1995 | 100 | Minus |
2R | 25286936 | 2R | 22885053..22885243 | 684..494 | 955 | 100 | Minus |
2R | 25286936 | 2R | 22884908..22885000 | 776..684 | 465 | 100 | Minus |
2R | 25286936 | 2R | 22884574..22884662 | 937..850 | 395 | 98.9 | Minus |
2R | 25286936 | 2R | 22884720..22884795 | 850..775 | 380 | 100 | Minus |
2R | 25286936 | 2R | 22885297..22885356 | 493..434 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:27 has no hits.
UFO03324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:37 Download gff for
UFO03324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 391..1445 | 9..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:40 Download gff for
UFO03324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 107..1161 | 9..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:54 Download gff for
UFO03324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RB | 107..1161 | 9..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:54 Download gff for
UFO03324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22884449..22884661 | 851..1047 | 92 | <- | Minus |
2R | 22884720..22884793 | 777..850 | 100 | <- | Minus |
2R | 22884908..22885000 | 684..776 | 100 | <- | Minus |
2R | 22885054..22885243 | 494..683 | 100 | <- | Minus |
2R | 22885297..22885356 | 434..493 | 100 | <- | Minus |
2R | 22885414..22885811 | 36..433 | 100 | <- | Minus |
2R | 22885916..22885942 | 9..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:40 Download gff for
UFO03324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18771972..18772184 | 851..1047 | 92 | <- | Minus |
arm_2R | 18772243..18772316 | 777..850 | 100 | <- | Minus |
arm_2R | 18772431..18772523 | 684..776 | 100 | <- | Minus |
arm_2R | 18772577..18772766 | 494..683 | 100 | <- | Minus |
arm_2R | 18772820..18772879 | 434..493 | 100 | <- | Minus |
arm_2R | 18772937..18773334 | 36..433 | 100 | <- | Minus |
arm_2R | 18773439..18773465 | 9..35 | 100 | | Minus |