UFO03326.5prime Sequence
1109 bp (1020 high quality bases) assembled on 2009-02-03
> UFO03326.5prime
CAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTCTGCTCCAC
CTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTCTGTGGCGA
CACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGGCCATCAGC
GCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCGCGGCGGAG
AGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGATCGCGGCAA
GGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCTGCGACTTG
AGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAGAGCGTGTA
CAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCAGCTCGTGA
AGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGAAGCTCGGG
AAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGGACCGACGT
GAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCAGATCGAGA
AGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGAAGCTCGCG
TCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTGAGCTCCGT
GAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAAGAACGAGT
CGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGAAGCTGACG
AAGGACAACGAGATACTCGTAAGATGGAGCGACGTGGGGAGCGCGAATCG
GACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAAGACGAGTT
GACGCCGAGTAGACGCGAAATGTCCAGACGTGAGGAACGCATTAATCGCC
GTGACGATCGAACTAGTCTAGACATGGATTTGTCCCGACGCATGACGTGA
CAGACTGACGAGACTCTGAGGACGCATCGAGAGCGACATCATCGACGAGC
AGAAGATCGACGTGTTGACGACGCGACACGAGAGAACGAGTCGATTGTTT
TGATTTAGTCTGACAGACACTCTCGACATCGATCGAGAAAGCGCGACATG
AACCCACGT
UFO03326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12239-RA | 2343 | CG12239-RA | 103..1192 | 9..1077 | 4930 | 98 | Plus |
CG12239-RA | 2343 | CG12239-RA | 390..499 | 407..516 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 501..610 | 296..405 | 295 | 84.5 | Plus |
CG12239-RA | 2343 | CG12239-RA | 565..642 | 501..578 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 595..672 | 471..548 | 270 | 89.7 | Plus |
CG12239-RA | 2343 | CG12239-RA | 509..612 | 475..578 | 190 | 78.8 | Plus |
CG12239-RA | 2343 | CG12239-RA | 569..672 | 415..518 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5792242..5793260 | 9..1018 | 4680 | 99.1 | Plus |
X | 23542271 | X | 5792529..5792638 | 407..516 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792640..5792749 | 296..405 | 295 | 84.5 | Plus |
X | 23542271 | X | 5792704..5792781 | 501..578 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792734..5792811 | 471..548 | 270 | 89.7 | Plus |
X | 23542271 | X | 5792648..5792751 | 475..578 | 190 | 78.8 | Plus |
X | 23542271 | X | 5792708..5792811 | 415..518 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:04 has no hits.
UFO03326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:19 Download gff for
UFO03326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 91..1141 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:50 Download gff for
UFO03326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 98..1148 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:51 Download gff for
UFO03326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12239-RA | 98..1148 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:51 Download gff for
UFO03326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5792237..5793287 | 1..1041 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:50 Download gff for
UFO03326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5686270..5687320 | 1..1041 | 98 | | Plus |