Clone UFO03326 Report

Search the DGRC for UFO03326

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:33
Well:26
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG12239-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03326.5prime Sequence

1109 bp (1020 high quality bases) assembled on 2009-02-03

> UFO03326.5prime
CAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTCTGCTCCAC
CTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTCTGTGGCGA
CACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGGCCATCAGC
GCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCGCGGCGGAG
AGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGATCGCGGCAA
GGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCTGCGACTTG
AGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAGAGCGTGTA
CAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCAGCTCGTGA
AGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGAAGCTCGGG
AAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGGACCGACGT
GAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCAGATCGAGA
AGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGAAGCTCGCG
TCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTGAGCTCCGT
GAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAAGAACGAGT
CGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGAAGCTGACG
AAGGACAACGAGATACTCGTAAGATGGAGCGACGTGGGGAGCGCGAATCG
GACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAAGACGAGTT
GACGCCGAGTAGACGCGAAATGTCCAGACGTGAGGAACGCATTAATCGCC
GTGACGATCGAACTAGTCTAGACATGGATTTGTCCCGACGCATGACGTGA
CAGACTGACGAGACTCTGAGGACGCATCGAGAGCGACATCATCGACGAGC
AGAAGATCGACGTGTTGACGACGCGACACGAGAGAACGAGTCGATTGTTT
TGATTTAGTCTGACAGACACTCTCGACATCGATCGAGAAAGCGCGACATG
AACCCACGT

UFO03326.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12239-RA 2343 CG12239-RA 103..1192 9..1077 4930 98 Plus
CG12239-RA 2343 CG12239-RA 390..499 407..516 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 501..610 296..405 295 84.5 Plus
CG12239-RA 2343 CG12239-RA 565..642 501..578 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 595..672 471..548 270 89.7 Plus
CG12239-RA 2343 CG12239-RA 509..612 475..578 190 78.8 Plus
CG12239-RA 2343 CG12239-RA 569..672 415..518 190 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5792242..5793260 9..1018 4680 99.1 Plus
X 23542271 X 5792529..5792638 407..516 295 84.5 Plus
X 23542271 X 5792640..5792749 296..405 295 84.5 Plus
X 23542271 X 5792704..5792781 501..578 270 89.7 Plus
X 23542271 X 5792734..5792811 471..548 270 89.7 Plus
X 23542271 X 5792648..5792751 475..578 190 78.8 Plus
X 23542271 X 5792708..5792811 415..518 190 78.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:31:04 has no hits.

UFO03326.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:19 Download gff for UFO03326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 91..1141 1..1041 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:50 Download gff for UFO03326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 98..1148 1..1041 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:51 Download gff for UFO03326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12239-RA 98..1148 1..1041 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:51 Download gff for UFO03326.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5792237..5793287 1..1041 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:50 Download gff for UFO03326.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5686270..5687320 1..1041 98   Plus