UFO03327.5prime Sequence
1093 bp (1002 high quality bases) assembled on 2009-02-03
> UFO03327.5prime
CAGTCGACATGGCCAAGTACTTTATAGCCCTGGTGTTGCTGGTGTGTCTG
GCCCTGGAGAACAGGAACGTATACAATCGCCTGCACGCCCGCTCCCATCC
GAGTTCCCGTGGCGACATCCTTCGTCCGCATCCTAAGCACCAGCCGCATC
CCCATGTGCAGCACACCTCGCAACAGCTGCAGCAGCAACACCATATCCGG
CAGCAACGATCCCGTCAGCTGAAACACCTGGAACCGGATCCGACCAGCGA
GGAGGACGATGTACCGATCACCAAGCGGGAGTACTATGCCCGCCTGAGGC
GCCACGTCATCCACAAGAGGCAGCACCTCCTGCAGCAGGAGCTCAGCTAC
AACCATCCCGGCTCCCATTCGGAGCAGCTAAAGGTGCCCCGCCTGTGGCA
ACACCTCATGGAGCAGGAGGAGAAGGCACACCGACATGTGAGCCCGCCCG
TGGAGTTGCCTATCATGTACGGAGATGCCCCCGAGGAGTCATCCCTCTCC
TCCGATGATCACTTTGATGATCTGTCGCCGCTGGACTTTGTGCGCAACGA
ACTGATGGCCGAGGACCAGCAGAATCAGGAGAAGGATCTCGATCTCGATC
TGGACCTAGATCAGCAGCCGGAAACGCCCATAGAGCCAGAGCTCCCATTG
GGGTGAGAGGAACATCACCATTTCGGTGAAGTCCAGCGCCGGAGGATGCC
CCAAGTGCGAGAGCAATCGCCAAGTGGAGCACATCACCGAGGAGCAGCTG
ACCCACTTACGCATCGAGTTCGTTAAGCAGCAGATCCTGGAGAAGCTGCG
CCTCAAGGAGAGCCCCAAGGTGTCGGCCGTGGAGCTGCCCAAGCCCATCT
TCGACGGGATGACACTCTCCCATCCGGACGATAGCACCAAGAACAAGGAG
CTGGACGATTACTACGCTCGCACTAGCAGAGTTCATACTGCTCATAGAGA
GGAGTCGAGTGCAACGAGCGAGAAAATGAAATCATCGTCATGTGCTCACT
TCAAGATAGACGACGAAGATGCGAGGGCTCGACGTGAGCACCGCGTCCTG
TGCTCTCAAGAACCAAACGAACCGCACCGAAACGGATCGGGAA
UFO03327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| daw-RC | 3050 | CG16987-RC | 673..1771 | 9..1090 | 4915 | 97.6 | Plus |
| daw-RA | 2693 | CG16987-RA | 547..1645 | 9..1090 | 4915 | 97.6 | Plus |
| daw-RB | 2819 | CG16987-RB | 673..1771 | 9..1090 | 4915 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2809311..2810247 | 9..944 | 4560 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 19:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6924 | 139..348 | 173 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6865 | 126..247 | 173 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2608 | 91..436 | 169 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2595..2898 | 135..443 | 162 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2416..2514 | 136..234 | 161 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6839 | 126..240 | 161 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6899 | 126..228 | 157 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6886 | 126..250 | 149 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2480 | 126..242 | 143 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2987 | 135..355 | 137 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..7100 | 136..444 | 127 | 54.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1167 | 126..208 | 127 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6908 | 170..353 | 121 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1510..1587 | 151..228 | 120 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2895 | 138..230 | 118 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1591 | 127..211 | 115 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1142 | 126..207 | 113 | 59.8 | Plus |
UFO03327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:17 Download gff for
UFO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| daw-RA | 539..1646 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:46 Download gff for
UFO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| daw-RB | 664..1775 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:46 Download gff for
UFO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| daw-RB | 664..1775 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:46 Download gff for
UFO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2809302..2810253 | 1..949 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:46 Download gff for
UFO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2809302..2810253 | 1..949 | 99 | -> | Plus |
