UFO03329.5prime Sequence
1088 bp (941 high quality bases) assembled on 2009-02-03
> UFO03329.5prime
CAGTCGACATGTCCTCATCCGATGGAAAACTTCGTTACGATGGCCGTGTG
GCGGTGGTGACGGGAGCTGGTGCCGGTTTGGGCCGCGAGTACGCACTGCT
CTTCGCGGAGCGTGGCGCCAAGGTGGTGGTCAACGATCTGGGTGGCACCC
ACTCCGGCGATGGAGCATCGCAGCGGGCCGCCGACATTGTGGTGGATGAG
ATCCGTAAGGCCGGCGGCGAGGCGGTGGCCGACTACAACTCGGTAATCGA
TGGGGCAAAGGTCATCGAGACGGCCATCAAAGCTTTCGGACGCGTCGATA
TCCTGGTCAACAATGCCGGCATTCTACGCGACAGGAGTCTGGTGAAGACC
AGCGAACAGGACTGGAATCTGGTCAACGATGTCCATCTGAAGGGCAGCTT
TAAGTGCACCCAGGCGGCATTCCTGTACATGAAGAAGCAGAACTATGGCC
GCATCATCATGACATCGTCCAACTCGGGCATCTATGGTAATTTCGGGCAG
GTCAACTACACTGCCGCCAAGATGGGCCTCATCGGATTGGCCAACACGGT
TGCCATCGAGGGAGCCCGCAACAATGTTCTTTGCAACGTCATCGTGCCAA
CTGCCGCCAGTCGAATGACCGAGGGCATTCTGCCCGACATTCTCTTCAAC
GAGCTGAAGCCCAAGCTGATTGCTCCCGTAGTGGCCTACTTGTGCCACGA
GTCCTGCGAGGATAATGGTAGCTATATCGAGAGTGCCGCCGGCTGGGCCA
CCAAGCTGCACATGGTTCGCGGCAAGGGCGCTGTGCTGCGTCCTTCGCTG
GACGACCCCGTGACCATTGAGTACGTCAAGGATGTGTGGTCGAATGTGAC
CGACATGTCCACGCCAAGCACTTGGTGCCATCGCAGAGCTCTGCACCCTG
CTGAGTGCTGAGAGCTCAGAGCGCGCGACGCATCGAGATGCTCGAGTCAT
AGCAAGAGCTATACTACGCCTGGCATGGGCATCGTCAAACGCGAGACTGC
CTTCTGTACGAAACGATGCGATCCCGCATCACTTCTCGTCGGCGCTTCGT
GCATGTCACGCAACTGTCACAGCTTGCCAGCCATGACT
UFO03329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfe2-RB | 2116 | CG3415-RB | 116..1035 | 8..918 | 4350 | 98.7 | Plus |
| Mfe2-RA | 2225 | CG3415-RA | 225..1144 | 8..918 | 4350 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16271519..16272231 | 8..720 | 3550 | 99.9 | Plus |
| X | 23542271 | X | 16272524..16272697 | 717..888 | 755 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:30 has no hits.
UFO03329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:14 Download gff for
UFO03329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3415-RA | 197..1110 | 1..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:37 Download gff for
UFO03329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 220..1133 | 1..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:25 Download gff for
UFO03329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfe2-RA | 220..1133 | 1..909 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:25 Download gff for
UFO03329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16271514..16272228 | 1..717 | 99 | -> | Plus |
| X | 16272525..16272759 | 718..937 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:37 Download gff for
UFO03329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16165547..16166261 | 1..717 | 99 | -> | Plus |
| arm_X | 16166558..16166792 | 718..937 | 91 | -> | Plus |
