UFO03330.5prime Sequence
1108 bp (1002 high quality bases) assembled on 2009-02-03
> UFO03330.5prime
CAGTCGACATGGATTCGGATACGGACTCGGAGCGGGAGAAGAGCAGCGAT
CCCAACGAGGGACTGCTCAGTAGCGATGACAAGACATTCCACGACGATGA
TGAACCGGCGGAGGATTCCTCTCCGGCGGACGATGAGGAGGAGCCCGAGG
AGGAGGAGTGCCTGCTGCCGCAGAAGAAGGCACAGATTCGCTGCGACCAA
GACCAGCCACCTTTGGTGGTCTTGGTACAGCCGTCGGCGGAAGCCATAGA
AGTGCGCCAAGAAATCGATGATACCAATCCGGTGGCAGTAGCTGCCAAAG
CTAGCGATATGGATGGGGATTCGCAACTGGAGGTGATGGAACACCAAATG
GAGACCGTAACCGAACCGGATCCCGAGCCTCCGAAGTGTCCAACATCCCT
GCGCGATAGTGTCCGCGAGTCCGTTGAATGCTTCTATTCCGCCCAGGATC
TTCTCGAGTACGGACACATGCTGTCCTCCACTTCGATGGTCCGAACACCG
GATGTGGAGTCTGGCTACTTTGAGAAGTCCGAGAGCGATGCTTCGCGCGA
CGAGTGGGAGGGTCCGTCGTCGTCATCCTCGGGCGCAGCCCGTTGTCGCC
TTCTCTCCGGCATTTCCGGACTCTCCGTCTCTTCGTCGAGTCGCCACAGT
GCCGAGGGTTTGCGCATGGAACTGAGCCGATTTCGCACCATGATCGAGAC
TCTCGAGCGGGAAAGTCTCGAGAAATCGCAATCGGAGCTGCAGTTGAAGG
CCAAGAGCAAGGCGAAGCCAAAGCCCAAGCAGAGATCCCACGTACAGGAT
GCGGCTGGGGAAAGTGGGTTCGGACAGGTTCCGAGAGGGGCTTCTGGTCA
ACGATCTTCGGCCAGGCGGGTCTGGCGATCAGTCAGATGAGAGAGCGCAT
TGCGACATACAGAAAGCTCATCGGGCTCTCGAGCTGCTCGAGGACTACAC
GCGAGACTTCGGAGCGCAGATCGGGCGCTGCGTATGCATCGACGCGTATA
CGCATATTTAATCTCCCCTGTCAGCGCTGTTAGAATTAACAAGATTCTAT
GATGACATATGGATGACTCGGAGAACATACAACAAAGGCGCGGAAACTGC
ATGCACAA
UFO03330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlg1-RM | 3196 | CG1725-RM | 47..1145 | 9..1086 | 4810 | 97.2 | Plus |
| dlg1-RF | 2554 | CG1725-RF | 47..1145 | 9..1086 | 4810 | 97.2 | Plus |
| dlg1-RU | 2524 | CG536-RU | 830..1018 | 914..1086 | 430 | 87.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11375809..11376687 | 9..886 | 4285 | 99.4 | Plus |
| X | 23542271 | X | 11376842..11376888 | 914..959 | 185 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:03 has no hits.
UFO03330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:13 Download gff for
UFO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..1158 | 3..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:08 Download gff for
UFO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..1158 | 3..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:16 Download gff for
UFO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..1158 | 3..1097 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:16 Download gff for
UFO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11375806..11376718 | 3..913 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:08 Download gff for
UFO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11269839..11270751 | 3..913 | 98 | -> | Plus |
