UFO03331.5prime Sequence
1145 bp (1033 high quality bases) assembled on 2009-02-03
> UFO03331.5prime
CAGTCGACATGCGCCAGCAGTTCCTGGTCATATCTGCCTTTCACGAGGAC
ATCATCGAAATAGCCGAGACCCTGAACATGTTTCACGTGGGCAATCAGTG
GATGATTTTCGTGCTGGACATGGTGGCTCGGGACTTCGATGCCGGCACTG
TGACCATAAACCTGGACGAGGGAGCCAACATAGCCTTCGCCCTCAACGAA
ACGGATCCCAACTGCCAGGACTCGCTAAACTGCACGATCTCGGAAATTAG
TCTCGCTCTGGTCAACGCTATTTCCAAAATTACCGTCGAGGAGGAGTCCA
TATATGGTGAGATCTCCGATGAGGAATGGGAGGCCATCCGCTTTACCAAG
CAGGAAAAGCAGGCCGAGATTCTGGAGTACATGAAGGAATTCCTGAAGAC
CAATGCCAAGTGCTCCAGCTGCGCGAGATGGCGCGTGGAGACGGCCATTA
CCTGGGGCAAAAGCCAGGAGAATCGCAAGTTTCGCTCAACTCCCCAACGC
GACGCTAAGAACCGAAATTTTGAGTTCATCAACATTGGCTATTGGACACC
CGTGCTGGGATTCGTCTGCCAGGAGCTCGCCTTTCCGCACATCGAGCACC
ACTTCCGCAACATAACCATGGACATTCTGACCGTGCACAATCCACCCTGG
CAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGAGCACAAGGGCAT
TGTTATGGAGATCGTCAAGGAGCTGAGTCGCGCCCTAAACTTCAGCTACT
ACCTTCACGAAGCCTCCGCATGGAAGGAAGAAGATTCACTCAGCACATCA
GCGGGCGGAAATGAAAGCGACGAGCTAGTTGGTTCCATGACCTTTCGTAT
ACCCTATCGAGTGGTGGAGATGGTGCAGGCAATCAGTTTTCATCGCTGCC
GTGCAGCCACCGTTGAGGATCCCGACCAAAAGCCCTTCAATTATACCCAG
CCCATCAGTGTGCAGAAGTACTCCTTCATCACCCCGCAAGCGGATGAGTG
TCCGCATTTACTTGTTCCACGGCAACCCTTCACGTGAGAACTATTCTGCC
TAATGGGCATCATTCTGCTGACTGCCTCCCACGCCTGTTACGCCATATAT
CGCCTAGCTTCCTCTGAAAGGAGATGCGAATCCTTGGCCTGTCCA
UFO03331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir93a-RD | 2742 | CG42315-RD | 694..1831 | 9..1145 | 5200 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20853873..20854251 | 387..9 | 1895 | 100 | Minus |
| 3R | 32079331 | 3R | 20853124..20853308 | 819..635 | 910 | 99.5 | Minus |
| 3R | 32079331 | 3R | 20852744..20853071 | 1145..819 | 790 | 90.1 | Minus |
| 3R | 32079331 | 3R | 20853359..20853507 | 638..490 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 20853565..20853669 | 489..385 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:58 has no hits.
UFO03331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:10 Download gff for
UFO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42315-RC | 329..1474 | 1..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:58 Download gff for
UFO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir93a-RD | 685..1830 | 1..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:29 Download gff for
UFO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir93a-RD | 685..1830 | 1..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:29 Download gff for
UFO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20853359..20853507 | 490..638 | 100 | <- | Minus |
| 3R | 20853565..20853667 | 387..489 | 100 | <- | Minus |
| 3R | 20852745..20853071 | 819..1144 | 92 | <- | Minus |
| 3R | 20853125..20853304 | 639..818 | 100 | <- | Minus |
| 3R | 20853874..20854256 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:58 Download gff for
UFO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16679287..16679389 | 387..489 | 100 | <- | Minus |
| arm_3R | 16678467..16678793 | 819..1144 | 92 | <- | Minus |
| arm_3R | 16678847..16679026 | 639..818 | 100 | <- | Minus |
| arm_3R | 16679081..16679229 | 490..638 | 100 | <- | Minus |
| arm_3R | 16679596..16679978 | 1..386 | 98 | | Minus |
