UFO03332.5prime Sequence
1163 bp (1001 high quality bases) assembled on 2009-02-03
> UFO03332.5prime
CAGTCGACATGGGCGTCATGCAGGCCACCACCATGGGCGGAGCCAAGCTG
GACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGGCCGCCGTTCCCGT
TCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAGGTGCTGAGAATGA
AGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAAAAGCATCTCACAA
CTGGACAACACCAATAAGCAATACTTCCTTATGCTCGAGAACATCACATC
GCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATGGGCACTCGTCAGC
ATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCAGATGGCCAAGTGC
GCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGTGCGGAATGCAGAC
CTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGACAAGTACTGGGGCC
GCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCACGATTTCTTTCAC
AATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGATTCTGCAGCGCCT
GCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGCTACAGATTCTACT
CTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGAGAATCCAATGGCC
CCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGGCGCCCAGGTCGGC
CACTGTGCCCGGCACTGTCTTCGATTATCATCCGGAGAACAGCATAGACG
AGGACGATCTGGAGGATGACGACGAGGCAGCAACGAGGCTGGCGATGAGC
TGGAGGCGCACGACACGACGATGATCTGCATCTGGTGGCCGCCGACAGTG
GCAACGCTTCGGCGACGAACAGCAGCACAGGAGGAGATGCCTGGCAACTA
CGATGCAGATTGCCTCCAACGATTCTAACTCATTGCTGAACCTGCTACCA
GACGTCACCTGCACAGCGTGATTTGCAGAGCAGCGGCGCGGAGGAGTTAA
GCAGACGGCATCCCCACAATACCACTACCGATGAGAGAGAGGATGAGCAC
CGGCCTATGCCACCGCTTCGGACTTGTGTGTTTATGGCCGCCAAGCGGCA
GCGCCTGCGCTTGCTGGCGAAGTCCAGGAACATTCATTCCCATCTCCGAA
AAGAACGAGATAT
UFO03332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10082-RB | 2795 | CG10082-RB | 422..1580 | 9..1154 | 5115 | 97.2 | Plus |
| CG10082-RA | 4001 | CG10082-RA | 1124..2279 | 12..1154 | 5100 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21655121..21655502 | 223..604 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 21655591..21656086 | 604..1094 | 1785 | 95.6 | Plus |
| 2R | 25286936 | 2R | 21654774..21654907 | 12..145 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 21654968..21655046 | 144..222 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:50 has no hits.
UFO03332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:09 Download gff for
UFO03332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10082-RB | 414..1586 | 1..1163 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:47 Download gff for
UFO03332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10082-RB | 414..1586 | 1..1163 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:35 Download gff for
UFO03332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10082-RB | 414..1586 | 1..1163 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:35 Download gff for
UFO03332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21654770..21654907 | 4..145 | 97 | -> | Plus |
| 2R | 21654970..21655046 | 146..222 | 100 | -> | Plus |
| 2R | 21655121..21655502 | 223..604 | 100 | -> | Plus |
| 2R | 21655592..21656160 | 605..1163 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:47 Download gff for
UFO03332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17542475..17542551 | 146..222 | 100 | -> | Plus |
| arm_2R | 17542275..17542412 | 4..145 | 97 | -> | Plus |
| arm_2R | 17542626..17543007 | 223..604 | 100 | -> | Plus |
| arm_2R | 17543097..17543665 | 605..1163 | 93 | | Plus |
