UFO03335.5prime Sequence
1104 bp (996 high quality bases) assembled on 2009-02-03
> UFO03335.5prime
CAGTCGACATGATGTCCAGTCCTCGCCAAAACGCAAGTGGCAGCGAGTTT
GAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTGAACTACGA
CAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAACGACCTCCA
GCTCCAGCCTAGGCACCCGGTTTGAGACACTCAAGAGCGTGGCCGCATCC
ATTGCGGAGGAGTCTTACGATGTGCCACGACCCCTGATCTTAGGCAGCAA
CCAGCTCCAGCAGCAAATGTCACAGATGACGCCAAGCAGTTCCGCCTCCT
CACTGCTGACCAGCGACAGCCTCTCCCTGAGCTTTTCCAGCTCGAACCGT
TCATCGCTGGCCAACATGCCGGATTACGACATCCCTCGACGAAATCCGCT
TCCTGTGCGCCGTCAACAAAGTGGGCTGACCTACGACTTTCCGCTGCCTC
CGTTGCAGGAGCAGGTTCCGCGGGTGCTGTGCACACCCTCTACCGTCACC
ACTACCAAAGAACTGCCTCTAGAGCTCTCCTCCGCACTAGAAACACTCGC
AAAGCTGCAACTGCAGACTACTGCGGCCATTAATCGATTGCTAAGTTTCG
TAGTACCCAATTGGCGCACCCGCGCTCAACTCGAGCCGGCCATCATGGAT
CTGAAGCTGGCCGCCCTGCGTCTGCGCACAACACTCCACGACCTGACAGA
GTTCGGGGAGGGAGCCCTGGGAAACGCCACGCGTTCGGAGGACCGAAACC
TGGCCCTCAAGCTGCGGCCCTTGGTGCGGGCTTTGCGAGATGCCAACAAG
CTGATTCACGACTCTTCCGAATCCCTCGATGCCCAGGGAGCCTGGTCTAT
AGATCAGCTGGGCAGAAGCGACGAGAAGCACGGCTGCCGACCCCCGGACG
CACTGACCAACTGATGGTTTGTGCCCAGACGCTCACTGAGACGTGCGCTC
ACACCAGTTTCATACAGGCACGCTCGCTACTTTTAGCGCAGCTGACGTGG
TCCAACGAGATCAGACGGGAGTGTAAAGGCAGTCGGGCACGCTGATGTGA
GACTAGACTATGTGGCCTTGATCCAAGGATGCGACCTGCCAAGACAAAAA
CTAA
UFO03335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 2629 | CG1212-RF | 314..1431 | 9..1098 | 4795 | 96.8 | Plus |
| p130CAS-RE | 2585 | CG1212-RE | 270..1387 | 9..1098 | 4795 | 96.8 | Plus |
| p130CAS-RD | 3292 | CG1212-RD | 977..2094 | 9..1098 | 4795 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 172202..173165 | 9..968 | 4625 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 20:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1702..1763 | 329..268 | 112 | 64.5 | Minus |
UFO03335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:23 Download gff for
UFO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1940 | 9..968 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:18 Download gff for
UFO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1940 | 9..968 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:23 Download gff for
UFO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1940 | 9..968 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:23 Download gff for
UFO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 172202..173165 | 9..968 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:18 Download gff for
UFO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 172202..173165 | 9..968 | 99 | == | Plus |
