UFO03337.5prime Sequence
1073 bp (925 high quality bases) assembled on 2009-02-03
> UFO03337.5prime
CAGTCGACATGGATGCGACGTGGGCAATGGAGCAGCTGCTGTCTGCAGTT
GAGATGGGAGGTAGCCACAGCGAGGCCACCACACCAACGGCCACGACCAC
CATATCGATCTGGAGCGCCCCCTCCGAGGGCAGTGGCTCTAGTTCCATGG
ACCCTGTCTCCTTTCGGTTCCACTTGGACGGGCAGCCTATACTGCCACCG
CTGATGACGAGCGCCAAGAAGCGCGAGGTGCAGCTGGCCCGCCAGATGGC
AGAAGCGCTGGAGAAGCGGTACCGCCTGGCCAGACACTCGGCGGGATCCG
ACATGGCCAGTAGGAGAAGTGTGTCACAGCTGCAGCAGACAGAAACGTTA
ATCTATGACAGCACACGGGGCCAGGCTCGTCCTCAGACTCTGGTCTTTGG
CAAACAGTTGCCCACCATACAGGTGGATCCTCCCACGCCTCAACCATTTG
TGAAATCAATAGAAAACACTTCCCCAAGGCGGCATAATCGCATTACCGAT
CGTATCCTGCAGTTCGAGCAGTCGGGACTGGGTAAGCTGCTGCCCAAAGT
TCCAGATAAGTGTATCCTGCGCACAAGTCCTGCGGTAGCCGAAGACCAGC
AGGATCAGGATACAAAGGACACAACGGCAAGGGAGCTCGGCAGTCCACTG
GCAGAACCAGCTAATTTTCAGCGTTCGAGAAGTTTCACACTAGAGGAGCC
CTCCCAGGTTCTCGTGGAGCACATGGAGAGGGAGGCCCTGGGCTGTGAAA
CCCAGCCAGAGTTTGGCCAACTTCGAGAAGCAGACCATCGAGTCTTCACG
CCAAGCGGGTGAACCGTAGTGCAGAGTATTAGCAGCAAAATTAGCCACAA
CAGCTACAATAGCAACAGTAGCGCCGCAACCAGAGCACCATCGCCACTAA
AACCACAACCGCGGGCAGCAGCTGTTTTTAGCGGATCGCGAGGTGGAGCG
TTTATAGACCGGGCGCTGGACGAGCATGCGCTTTGGAAGCCAGCGCAAAG
CAGATGCCGCACTATCTGCTGCATCGGGAGCGATGATCATGTCATCACCA
GGGAAGACGTTCGTCCATGCAGG
UFO03337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp110-RH | 2320 | CG14617-RH | 274..1308 | 9..1033 | 4690 | 97.7 | Plus |
| Cp110-RG | 2650 | CG14617-RG | 453..1487 | 9..1033 | 4690 | 97.7 | Plus |
| Cp110-RE | 2919 | CG14617-RE | 343..1377 | 9..1033 | 4690 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22483086..22483881 | 203..994 | 3520 | 98.1 | Plus |
| X | 23542271 | X | 22482841..22483026 | 22..207 | 915 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:55 has no hits.
UFO03337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:01 Download gff for
UFO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14617-RC | 321..1377 | 1..1045 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:42 Download gff for
UFO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp110-RE | 338..1394 | 1..1045 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:33 Download gff for
UFO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp110-RE | 338..1394 | 1..1045 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:33 Download gff for
UFO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22482842..22483022 | 23..203 | 100 | -> | Plus |
| X | 22483087..22483943 | 204..1045 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:42 Download gff for
UFO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21884678..21884858 | 23..203 | 100 | -> | Plus |
| arm_X | 21884923..21885779 | 204..1045 | 96 | | Plus |
