UFO03339.5prime Sequence
1080 bp (958 high quality bases) assembled on 2009-02-03
> UFO03339.5prime
CAGTCGACATGATACCGACAAGCGTCACCAACTCACCGCCGCCAGCGGGT
TTGGGCCAGAATGGAGCATCTGCCTCCTTGGGCTCGGCTACTGCGGCGGC
CGGAGGAGGGATGCTGTCCGGCTTGGGAATGGTGGCGGTCTCTGGATGTG
GGTCGGCAGGAACAGGAGCTCAGAATAACTACGGTTCCGTTGTGCTCGGC
TTGGCCTCGCTAATCCTCGAGGGCAGACCCATTGCCGACGATGAGTACCA
GCAGCAGACGGTGGGAGTAGTCGGTTCAGGAGCAGCAACAGCAGGATCTG
GGGGAGGACGCCTATCGCCACGACCCTCCACCTCCAGGGCGGCCATTAAC
ATCACAACGAATCCCTATGGTTCCATGGGAGGATCGGAAAATAGAGCCGT
CAATGGAAGTGGTTCGACTGGGTCGCCCAGCAGTAGTTCGCTAACCCACC
AGCGATGGACACAGAAGCTCTGCCAGCTGCGTCAGATTTCGCCGGCTGCC
CAGACGATGAGCGCCGAACCGGAGTTGGTTTCTTTGGCCATCAATGATCT
TAACAAGGATCATGGCGATTATGAAATTGTACGACGTGTCATGCTCAATC
GAGCTGGTGGAACGGGTTTGGTTAGCAGTGCCGGCGGTGGAACCAACAAT
TCCAGTGCCGCCAGTTCGCCGGGCTCGAATTCATCGGACAACATTCTCCA
CTCGCTGCAATCGCTGGCCACCACCTGCTTAAGAGGTGGACCTGCCTTGG
CACCGCCACCATCAGTTGAGTCAAGACCTCTGAATCTGGGCCTTTCATTG
GTCGGGTTTGGGGGGATCCGGTGGCCGAGATTGGGATTTGGAGGAGAGCA
GCAAGCATTAGCACACACCAACACAACGGCAACTGCCACTGCCAGCAGCG
GAGCAAGCAGCTTCGCATCGCCGGCCAAACACGGGCGCACTGTGATCAGT
TCCTCAGAAGAATGGGTCTGGCAAGGCGAGAATGCATCGAAGCTGAGAGC
CATCTGTGAATTGTCCTAACTGAATTGACTGCACGTTGCGCGTATGGATT
GAAATGAGCATCTGGCAACCGAACCGTGCA
UFO03339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9005-RC | 5832 | CG9005-RC | 943..1969 | 8..1025 | 4655 | 97.8 | Plus |
| CG9005-RB | 5982 | CG9005-RB | 722..1748 | 8..1025 | 4655 | 97.8 | Plus |
| CG9005-RA | 5273 | CG9005-RA | 722..1748 | 8..1025 | 4655 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11624225..11625193 | 972..8 | 4460 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:30 has no hits.
UFO03339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:38 Download gff for
UFO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 768..1767 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:05 Download gff for
UFO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 713..1712 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:28 Download gff for
UFO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 713..1712 | 1..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:28 Download gff for
UFO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11624240..11625197 | 1..957 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:05 Download gff for
UFO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7511745..7512702 | 1..957 | 98 | | Minus |
