UFO03340.5prime Sequence
1144 bp (1017 high quality bases) assembled on 2009-02-03
> UFO03340.5prime
CAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAACGGGGCAA
AAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACGGCCAAAAA
TCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCGCCAAATTG
AGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCGCCCTGCCG
CAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGCAGACTGCG
CCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGCTCGGCCGG
AAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATGCTGGCGAC
TTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGCCGTCTATT
AGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACCAAAGGAAG
ACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGACCGGTTTCG
CGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTGCCAGATGT
GACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTTACAGGCAA
AGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAGGAGATGGC
GGTGGCGTTGGCCGTGGAGCAGAACAAGGACGAAAAACAGGAGCGCTGTC
CGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAAACAAGGCTG
GCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAATGCCATCGG
GGGCAGTGACAAAGCCAAAGGAGACGACCTGCAATCAAGAGGAGAATGAG
CCCTCTGCCCGGGACAGTGCTGGTGTCGCTTTTGCAGCATGCAACTGCTG
AAGATGCACATGGAAATCAACGTTTGGGCCACTACTGTCGCTGGATCTAT
TTTCGGTACACCCAGTCGTATGCTCGATGCTTGGATGCACTTCTCGCCTG
CCGCAAATAATTTACGTGTGTTTAGAACAGCATTTAATTATGGCCGATCA
CGCGATCGATTCTCGATGATGAGCTCGCGGGTCCTTTCCCGGGATTGGGC
CTATAAACCTGGCTGGGTGGCCTGTCTGCTAGGAATCAGAACCG
UFO03340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipk1-RC | 2633 | CG30295-RC | 467..1570 | 8..1092 | 4965 | 97.7 | Plus |
| Ipk1-RB | 2636 | CG30295-RB | 467..1570 | 8..1092 | 4965 | 97.7 | Plus |
| Ipk1-RA | 2472 | CG30295-RA | 467..1570 | 8..1092 | 4965 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20871671..20872005 | 8..342 | 1675 | 100 | Plus |
| 2R | 25286936 | 2R | 20875231..20875546 | 590..903 | 1450 | 98.7 | Plus |
| 2R | 25286936 | 2R | 20872539..20872692 | 342..495 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 20873650..20873752 | 495..597 | 515 | 100 | Plus |
| 2R | 25286936 | 2R | 20876474..20876578 | 956..1055 | 220 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:11 has no hits.
UFO03340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:36 Download gff for
UFO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipk1-RB | 447..1478 | 1..1023 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:39 Download gff for
UFO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipk1-RA | 462..1493 | 1..1023 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:18 Download gff for
UFO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipk1-RA | 462..1493 | 1..1023 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:18 Download gff for
UFO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20871666..20872005 | 1..342 | 99 | -> | Plus |
| 2R | 20872540..20872692 | 343..495 | 100 | -> | Plus |
| 2R | 20873651..20873751 | 496..596 | 100 | -> | Plus |
| 2R | 20875238..20875546 | 597..903 | 99 | -> | Plus |
| 2R | 20875605..20875663 | 904..956 | 89 | -> | Plus |
| 2R | 20876475..20876544 | 957..1023 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:39 Download gff for
UFO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16759171..16759510 | 1..342 | 99 | -> | Plus |
| arm_2R | 16760045..16760197 | 343..495 | 100 | -> | Plus |
| arm_2R | 16761156..16761256 | 496..596 | 100 | -> | Plus |
| arm_2R | 16762743..16763051 | 597..903 | 99 | -> | Plus |
| arm_2R | 16763110..16763168 | 904..956 | 89 | -> | Plus |
| arm_2R | 16763980..16764049 | 957..1023 | 95 | == | Plus |
