UFO03341.5prime Sequence
1138 bp (1024 high quality bases) assembled on 2009-02-03
> UFO03341.5prime
CAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGGGCGACATC
CTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAAATCCCAGA
GGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAATAATTTTAA
CGCCGACATCATTAAATTTAACAAATACAACAACACAAAATGTTGCCGCC
AACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACCAACTACGG
CCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCCGGGCGACG
AGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATTGGGTGAAC
ACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTTTGGGCCAT
GGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGTCATCATGC
GCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCCTGGTCACC
TTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGCGTACTTTA
TGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTTTGAGCTGT
TCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTGGCCTCGGG
CTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTCCGGTTAAC
CCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACTGGCCAATC
TTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCCTTGTCATC
ACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAGTTGAAGGA
GGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTATGCCATGA
CCACATGCAACGATGTGGTAGCCATCTTCATGTTTGGCGTGATAATCAGC
GTATATCTCAACGACTCGCTACCCAGCAAGTGCTGCAGGTCCCATTGGCA
TCGGATTGGACTCGTTTTGGCTATCTCTACGCCGATGCTCAGTACTGCCA
TCCGGAACGCGGACGTACGCAATGCCTCCGCTTCGTACCCAACAATCTGG
GGCGACCTCGCCCGTGATGGGCACCGCGCTCTCGGTAC
UFO03341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nha2-RB | 2625 | CG43442-RB | 737..1873 | 7..1128 | 5140 | 97.9 | Plus |
| Nha2-RA | 2162 | CG43442-RA | 274..1410 | 7..1128 | 5140 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22991135..22991449 | 321..7 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 22986803..22987092 | 608..319 | 1450 | 100 | Minus |
| 3R | 32079331 | 3R | 22986563..22986747 | 790..606 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 22986323..22986486 | 953..790 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:05 has no hits.
UFO03341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:42 Download gff for
UFO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nha2-RA | 265..1418 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:35 Download gff for
UFO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nha2-RA | 265..1418 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:30 Download gff for
UFO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nha2-RA | 265..1418 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:30 Download gff for
UFO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22986804..22987091 | 320..607 | 100 | <- | Minus |
| 3R | 22991137..22991451 | 1..319 | 98 | | Minus |
| 3R | 22986310..22986485 | 791..964 | 98 | <- | Minus |
| 3R | 22986563..22986745 | 608..790 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:35 Download gff for
UFO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18812032..18812207 | 791..964 | 98 | <- | Minus |
| arm_3R | 18812285..18812467 | 608..790 | 100 | <- | Minus |
| arm_3R | 18812526..18812813 | 320..607 | 100 | <- | Minus |
| arm_3R | 18816859..18817173 | 1..319 | 98 | | Minus |
