UFO03342.5prime Sequence
1122 bp (1014 high quality bases) assembled on 2009-02-03
> UFO03342.5prime
CAGTCGACATGATTCCCTGGATTTGCCTAAGCGCGGCCATTGTGCTCATC
CTGTGCCCCCTTCACACATCCTCGCGCAGCTACAGCAACGGTCTGATCTT
CTACGAACTGAAGACCCACCGACCCTACCTACCGCCCACGGTCAGTGTGT
CCAGGGGCCGAAATCTGGCCAGCGTCAAGTACTCCGAAAAGGGGTCCATC
TGGTCCACCTTTGGCCAGCCCTGCGAGTGCAGCGGACCCACCTGCGGATG
TTGCGCCGGTCTCAAGGTCGATCAGTACCGATTCGATCAGAAAGTGTGCG
CCAACGTGAGCTTCGTGCCGCATCTGGAGGAGGCCCAACTGGAGGTCTTT
CTTAATGGCAGGCCCTCCTCGAAATACGGAATCTCGGTGCGCAATCCGGC
GCCCTTCTGCATTCCCGTCATGATGGGTGTACCGATGGCCATGTGCGTCC
AAATGACCGACGTCACAGTGGTTGGGAACAACCTAAACATGTGCATGGAC
TTTGTGGTTCGGATGGCCACCACCGATCTCTTCGAGATGCATTTCCAGTG
CATGCGAATGGGTCTGGATGGTCTGCAGTATGTGGACAAGAATGGCAAGC
CCGTACTGCCGATGGGAGATGGTCAGAGCGACGATCCGGAGGAGTACGAG
TACGCCGAGCTGGAGGATCAACCGGAAGAGTATCCTTATCAAGAGGATGT
CAAGGAGGAGGCTCCATCCCAGGGCTATCAACCAGATAACAATCAGCAGC
AGAAGAATACAACACTGACCACTGATCAGGTTAAAGAGGATGAGATGGAG
AAGAATCAATCAATGGGCTATCAACCTCTCATCATAATAATCAAGCACAG
AAGATTGAGCCTCAATTAAATCTAGAAGATTAATCTACCAACCTCAAAGA
ATCAAACTCTAAGCGAGCAGCTAACAGGATCAGTAGATAGGAGAGATACA
CAAATGAGATCAGTTATCAACACTAGTCAATAGTGAGACAAAAGAAGAAA
GCTGCAGAAAGCAGCGAGATCACAGCTCGAAAATACCTGATGAGATGACG
ATGGCTATCACCCGATGGCGATGTTCCAAGGTCGAAAACCGCCTTAACTG
AAGATTCAGAAGAGAGAAGACT
UFO03342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2647 | CG8568-RA | 208..1322 | 1..1073 | 4575 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17450509..17451137 | 918..293 | 2995 | 99.5 | Minus |
| X | 23542271 | X | 17452043..17452336 | 294..1 | 1440 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:40 has no hits.
UFO03342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:38 Download gff for
UFO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1128 | 1..918 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:01 Download gff for
UFO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1128 | 1..918 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:13 Download gff for
UFO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1128 | 1..918 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:13 Download gff for
UFO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17450509..17451135 | 295..918 | 99 | <- | Minus |
| X | 17452043..17452336 | 1..294 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:01 Download gff for
UFO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17344542..17345168 | 295..918 | 99 | <- | Minus |
| arm_X | 17346076..17346369 | 1..294 | 99 | | Minus |
