UFO03343.5prime Sequence
1165 bp (1042 high quality bases) assembled on 2009-02-03
> UFO03343.5prime
CAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACTATATCCAG
CAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATTGTCGACTG
CAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAAGCTGATGC
CGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCTTCGACTTC
TGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGCAACTTCGG
CTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGACTTCCTGC
AGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATCCCAAGATG
AAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGGGCTGTGAT
CCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGATTGGCCAGA
TGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTGCCTATGTC
CTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCCATCAAGCT
TACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGACTTCGATA
ATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATCCTTCGCAG
CTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTGTTTCCCTT
CACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGGCGAGAAGA
TTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAAAGACCTTT
ATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTCGTCCCAAGGACAC
TCAGATCCAATGGGAGACCATTCTGCAATGCGTACAGTTCTCTTCGAGTT
TGAGCTCATCCGTACGGGTCACAATCGTGCCGCCTATGATGCGGCCTTGA
ACTTTGACTTTGAAACTTTGATGAGCAGCAGCCTGAACGAGGCGCAGCCA
TGGCTTGGGCAGTGCCAGGAGTTTAGTGCGGAAAACGCAGGAAGAGGCAG
CAGCGGCAGCCACCCTCAGGACGAAATCGATCCCGCCACGGAACAGAGAC
GCCATCGGGTGGCTCCGAATCATATCCTTGTGTGAAGACAAGTTCTATAT
TCAAGAATGTGACTA
UFO03343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-RA | 2784 | CG14886-RA | 540..1654 | 8..1112 | 5230 | 98.5 | Plus |
| Gyc-89Da-RC | 2339 | CG14885-RC | 231..1200 | 8..975 | 2310 | 82.8 | Plus |
| Gyc-89Da-RB | 2274 | CG14885-RB | 166..1135 | 8..975 | 2310 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16478826..16479940 | 8..1112 | 5025 | 98.4 | Plus |
| 3R | 32079331 | 3R | 16473369..16474325 | 8..963 | 2275 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:11 has no hits.
UFO03343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:36 Download gff for
UFO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 276..1403 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:45 Download gff for
UFO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 537..1664 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:02 Download gff for
UFO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 537..1664 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:02 Download gff for
UFO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16478823..16479950 | 1..1121 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:45 Download gff for
UFO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12304545..12305672 | 1..1121 | 97 | | Plus |
