UFO03344.5prime Sequence
1149 bp (1023 high quality bases) assembled on 2009-02-03
> UFO03344.5prime
CAGTCGACATGATGGAGCATTTCGGTGTCCTGGCCGTCGTGCTGCTGATC
GCGACTGCTGTCGGTGCCCAGGATACTTCGTCCAACTATCTGCTCACCGG
TCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTTTACCTTGG
CCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGGTGATTCAA
ACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGGGATATCAA
CCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACTGGAATTTC
CCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGACACACCATC
AGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACCCACACCAC
AGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAACTACGTTTT
ATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTAGCTATAAG
CAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCAAAGACATG
CAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCACCCACTTTT
ATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGGAAGCGCGC
TGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATATTCGCAAT
CATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAGTGTCTACG
ATTATATTCAGACCCGCAAAGGAGCCCCCAAAAAGCCACTGCTGATCGCG
TTTTCTGTACTGACAAATGCCCCCAAAATTTTCACCGTTAAGAAGGTGAA
CAATCCCAATGTGATTCACTGCCTAAATGGATTGCGTTGCTTTAGTATGA
TGTGGGTGGTATTTGGCACGGCTAAATGACCTTCTACGATCTGCCACACA
TCAACAAAAAACAAATTCTACACCTGGGTGCAGACCCCCTTATTCGATGT
TGGTCCAGAACCGGCTCGCTTTGGCGTGGAACACGTTCTTCTTCATGTCC
GGTCTGGCTGAATGTGCCTGGGGGTGCCTTCGGTGAATGGAGCGCCCCAG
GCCAAGCTAAAACACTCCCGAAGAAGTATTTCCTGCTCTTCCACTAGCC
UFO03344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..1369 | 9..1133 | 5200 | 98.2 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..1224 | 9..1133 | 5200 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9661022..9661424 | 700..298 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 297..9 | 1445 | 100 | Minus |
| X | 23542271 | X | 9660538..9660817 | 1056..773 | 1110 | 97.5 | Minus |
| X | 23542271 | X | 9660881..9660954 | 774..701 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:19 has no hits.
UFO03344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:34 Download gff for
UFO03344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 106..1210 | 9..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:36 Download gff for
UFO03344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..1212 | 9..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:03 Download gff for
UFO03344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..1212 | 9..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:03 Download gff for
UFO03344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9661022..9661424 | 298..700 | 100 | <- | Minus |
| X | 9660477..9660815 | 775..1121 | 94 | <- | Minus |
| X | 9660881..9660954 | 701..774 | 100 | <- | Minus |
| X | 9662363..9662651 | 9..297 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:36 Download gff for
UFO03344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9554510..9554848 | 775..1121 | 94 | <- | Minus |
| arm_X | 9554914..9554987 | 701..774 | 100 | <- | Minus |
| arm_X | 9555055..9555457 | 298..700 | 100 | <- | Minus |
| arm_X | 9556396..9556684 | 9..297 | 100 | | Minus |
