UFO03345.5prime Sequence
1138 bp (1038 high quality bases) assembled on 2009-02-03
> UFO03345.5prime
CAGTCGACATGTCCTTCGCGGATGATAGCTATAGCTTTGGTCGCTGCTAC
GAGTATCAGCCCGATGATTGCAAATGGCAGGCTACAGGACCTAGACCAGT
GGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATCCAGCAGCACCG
AGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATGCGGACATTAAC
TTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGCGTACCGCTCGA
GGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACTGCGCCTGCGTA
GCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGACCACGGCTCGA
TTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAATCTGCCCGTCAA
GGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTCGCCAATGAAGA
TTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAGATTTCAAGATT
AAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGATGACGAAAGCAG
TGAGATCAAATACGAATATCCAGATATGAGCCAATTCGTAAACGACATGC
AGGTCATGTGCAATATGATTGCCGATGGGCCATTGAAATCCTTCTGCTAT
CGACGTCTCTGTTATCTGTCGTCCAAGTATCAGATGCACGTGCTCCTCAA
CGAGCTGCGTGAGCTGGCTGCCCAGAAGGCGGTGCCGCATCGCGATTTCT
ACAACACCCGCAAGGTGGACACCCACATCCATGCCGCATCGTGCATGAAC
CAAAAGCATCTGCTGCGCTTCATTAAAAAGACGCTGAGAACAACGCCAAC
GAGGTGGTCACCGTCACCAATGGCCAGCAAATGACACTGGCCCAGTGTTC
CAGTCGATGACCTGACCACCTACGACCTGACCGTCGACATGTGGACGTCC
ATGCCGATCGCACACGTTCCATCGCTTCGACAGTTTAACCTCCAGTACAT
CCCATCGGGGAGTCGCCGCTCAGGAGTCTTCCTGAGACGACACCTATTTT
GAATGCCAATACTTGCCCAAACCATAAGAAGTGCCCTCGATCTGGAGGGA
TCCAAGTACCAAACGGCGACTGCGCTTCTCCCATCTAT
UFO03345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPdeam-RC | 3216 | CG32626-RC | 921..2066 | 9..1138 | 5020 | 97 | Plus |
| AMPdeam-RJ | 2620 | CG32626-RJ | 393..1470 | 77..1138 | 4680 | 96.8 | Plus |
| AMPdeam-RG | 2611 | CG32626-RG | 393..1461 | 77..1138 | 4535 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13834815..13835150 | 411..76 | 1680 | 100 | Minus |
| X | 23542271 | X | 13832277..13832673 | 1024..635 | 1575 | 97.2 | Minus |
| X | 23542271 | X | 13832903..13833032 | 540..411 | 650 | 100 | Minus |
| X | 23542271 | X | 13832745..13832840 | 635..540 | 480 | 100 | Minus |
| X | 23542271 | X | 13835377..13835445 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:22 has no hits.
UFO03345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:32 Download gff for
UFO03345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-RC | 913..1943 | 1..1024 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:54 Download gff for
UFO03345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-RC | 913..1943 | 1..1024 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:02 Download gff for
UFO03345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AMPdeam-RC | 913..1943 | 1..1024 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:02 Download gff for
UFO03345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13832746..13832840 | 540..634 | 100 | <- | Minus |
| X | 13832904..13833031 | 412..539 | 100 | <- | Minus |
| X | 13834815..13835149 | 77..411 | 100 | <- | Minus |
| X | 13835378..13835449 | 1..76 | 94 | | Minus |
| X | 13832277..13832673 | 635..1024 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:54 Download gff for
UFO03345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13726310..13726706 | 635..1024 | 97 | <- | Minus |
| arm_X | 13726779..13726873 | 540..634 | 100 | <- | Minus |
| arm_X | 13726937..13727064 | 412..539 | 100 | <- | Minus |
| arm_X | 13728848..13729182 | 77..411 | 100 | <- | Minus |
| arm_X | 13729411..13729482 | 1..76 | 94 | | Minus |
