UFO03346.5prime Sequence
1149 bp (1024 high quality bases) assembled on 2009-02-03
> UFO03346.5prime
CAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCATCTGGTGC
ATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCCAATTGCCC
GCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATGTGGCGAGG
GCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCCAGCGACTG
GTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATCCAGTTCTA
CGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGATGACCATTC
CGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGCATCTGAAT
CACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGTCTGTCGGC
AGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACTTCACCAGG
GCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGGGCGAGAAT
CGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCCCAGTTGCG
CATCCTTTATCTGGATGATAATGCCTTGACCACCGTTCCCGATCCCGTGA
TCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAATGAACACC
CTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGACTTACTCG
CCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGACAGCTTCC
TCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATCGTCTGGAT
CGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAGCAGCTGTC
CCTGGGTCAAAACGATTTCGAGGTGATCAGCGAAGGCGCATTCATGGGCC
TGAAGCAACTTAACGCCTGGAGGTGAATGGAGCTCTTAGCTGAAGCGTGT
GATGACCGGAGCCTTCAGCGACATGGTAACCTGGAGTATTCTGAATCTAT
CGTCCACAAATGCTTTTGGAGGTCAAGAGGTGCCCTCAGTGGGGCTGTCC
ATTGAGGCATGGTGTTCTCAAGGGCCAATTGCCCTGACTTCTTTGGGCGA
AAGGTGTGTTCCGGTTGAAGGAATCTTCGAACTCTGGAACCCTTCCGAA
UFO03346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 586..1728 | 9..1149 | 5180 | 97.6 | Plus |
| trn-RA | 3365 | CG11280-RA | 586..1728 | 9..1149 | 5180 | 97.6 | Plus |
| caps-RE | 4841 | CG11282-RE | 1001..1424 | 83..506 | 545 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13115298..13116369 | 9..1073 | 4845 | 98.7 | Plus |
| 3L | 28110227 | 3L | 13275802..13276225 | 83..506 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:45:18 has no hits.
UFO03346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:04 Download gff for
UFO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 584..1676 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:39 Download gff for
UFO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1678 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:50 Download gff for
UFO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1678 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:50 Download gff for
UFO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13115298..13116390 | 9..1096 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:39 Download gff for
UFO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13108398..13109490 | 9..1096 | 98 | | Plus |
