UFO03347.5prime Sequence
1106 bp (1006 high quality bases) assembled on 2009-02-03
> UFO03347.5prime
CAGTCGACATGGCTGGCCAACAGCTCGTGGTCTTGATCCCCAAAATAAAT
CCCAACTCCCCGAAGACCCTATACGACCTGTCGCTGCAGGCCCTCATCGG
GAGTATGAACACCAAGATACCGGCGCTGGACAGGATCAGTCGACTGGCTG
AGCTGCCACGCAACTTGCTCATCGATGTTTACGAAATGATGTCACAGCAG
GAGTCCTTGAAGGACACGCTGCTGGAGGAGCTGGCCCAGCTTGAGGTATT
CGCTCGACTCGTTCGCTATCCATTTGCTCGCAGTCAATTGCTGCGCATAA
TGGCCTCACTAATGGCCAGCCAAAAGATGCTGGCCAAAAGACTCAGCGAG
AACTATGTGTCGCGCTATGAGGTGGTGGCCGGTCACGAAGAAGAGGAACT
GGAGTCGAGTATGGATACAGTTGAGGATCGCTCAACGGAGTTCAGTTCAC
TGTATACCTACGATTCCGAATCTACAAATGCAGACAGCATCAGTGATTTT
AATGACGAATTCAGTGCTGATATCGGAAGCATAGTAGGTCTCCCACACCG
GAGAGCAACACAGGAGGAACTCGATGCGATCAATGATTCTGGCCTCGAGG
AGCTGTCCGCCGTTGAGCTGCAGGTCATAGATCTGGGCCTGCGCCTCGGA
TCGTTCCTCTCGGAGGCTGGATGGATGCAGGAGAGCATTACCGTGCTGGC
ATGCCTTAATGTAAGACTGAAGGATCTGCCGACCCACAAACACTGGTTGC
AGTTTCGACTCGACTGCCTGCAGCGCCTTTTGTATGCCGAATCGGCCCAT
TGCAACTTCAAGGAGGCAGAGAAAACCTACGCGGAATTGATGGGTCTGAA
CAAATGGCTCAATAAGAGCGTGCCAAACCAGCTGGTGCCATACCTACAGT
CAGATTTCGGCCATGTACTTTGCCCGCAATGAGTACAGACAGTCATTTGG
GGGAGCGGTCTCGCCATGCGATTTTAAAAGGATTATGCGAATCCACGCAC
CATCATCGATGTTCTGCGCCAGGCGGCGAGCCTGGTGTTCGATAAGCGGA
CTTGCCCGGTAATCTGCTCTCATCTGCAGGCGGTGCCACGCGCACGCCGA
TACTTG
UFO03347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..1463 | 5..1097 | 5030 | 97.9 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..1463 | 5..1097 | 5030 | 97.9 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..1463 | 5..1097 | 5030 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6593360..6593947 | 188..775 | 2940 | 100 | Plus |
| X | 23542271 | X | 6591580..6591763 | 5..188 | 905 | 99.5 | Plus |
| X | 23542271 | X | 6594088..6594313 | 775..997 | 830 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:58 has no hits.
UFO03347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:03 Download gff for
UFO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 360..1469 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:44 Download gff for
UFO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1471 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:36 Download gff for
UFO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1471 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:36 Download gff for
UFO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591577..6591763 | 1..188 | 98 | -> | Plus |
| X | 6593361..6593947 | 189..775 | 100 | -> | Plus |
| X | 6594089..6594313 | 776..997 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:44 Download gff for
UFO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6485610..6485796 | 1..188 | 98 | -> | Plus |
| arm_X | 6487394..6487980 | 189..775 | 100 | -> | Plus |
| arm_X | 6488122..6488346 | 776..997 | 96 | -> | Plus |
